fgenesh2_pm.scaffold_24000033 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pm.scaffold_24000033 T334170_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pm.scaffold_24000033 Sox 9 79
fgenesh2_pm.scaffold_24000033 Sox 99 167

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g02101 Acanthocheilonema viteae nAv.1.0.1.g02101 N 0.475
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.452
AAEL011380 Aedes aegypti AAEL011380 N 0.495
Aqu1.227714 Amphimedon queenslandica Aqu1.227714 N 0.431
ANCCAN_10156 Ancylostoma caninum ANCCAN_10156 N 0.464
ANCCEY_10333 Ancylostoma ceylanicum ANCCEY_10333 N 0.429
ACAC_0001052301 Angiostrongylus cantonensis ACAC_0001052301 N 0.445
ACOC_0000768601 Angiostrongylus costaricensis ACOC_0000768601 N 0.497
ASIM_0000048401 Anisakis simplex ASIM_0000048401 N 0.444
AALB006743 Anopheles albimanus AALB006743 N 0.495
AARA010318 Anopheles arabiensis AARA010318 N 0.495
AATE010886 Anopheles atroparvus AATE010886 N 0.491
AATE018776 Anopheles atroparvus AATE018776 N 0.495
ACUA021022 Anopheles culicifacies ACUA021022 N 0.495
ADAC001494 Anopheles darlingi ADAC001494 N 0.495
ADIR000367 Anopheles dirus ADIR000367 N 0.485
ADIR011701 Anopheles dirus ADIR011701 N 0.495
AEPI002924 Anopheles epiroticus AEPI002924 N 0.495
AFAF003948 Anopheles farauti AFAF003948 N 0.495
AFUN010134 Anopheles funestus AFUN010134 N 0.495
AGAP000005 Anopheles gambiae AGAP000005 N 0.495
AMAM015540 Anopheles maculatus AMAM015540 N 0.495
AMEC021909 Anopheles melas AMEC021909 N 0.495
AMEM017336 Anopheles merus AMEM017336 N 0.495
AMIN005344 Anopheles minimus AMIN005344 N 0.495
AQUA004962 Anopheles quadriannulatus AQUA004962 N 0.467
ASIS000124 Anopheles sinensis ASIS000124 N 0.495
ASIS009950 Anopheles sinensis ASIS009950 N 0.485
ASU_03902 Ascaris suum ASU_03902 N 0.478
ENSAMXG00000014031 Astyanax mexicanus ENSAMXG00000014031 N 0.444
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.441
ACEP16613 Atta cephalotes ACEP16613 N 0.461
BGIBMGA001132 Bombyx mori BGIBMGA001132 N 0.449
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.436
Bm4180 Brugia malayi Bm4180 N 0.475
CBN17977 Caenorhabditis brenneri CBN17977 N 0.520
CBG17468 Caenorhabditis briggsae CBG17468 N 0.515
hmg-1.2 Caenorhabditis elegans WBGene00001972 N 0.515
CJA09678 Caenorhabditis japonica CJA09678 N 0.517
CJA42049 Caenorhabditis japonica CJA42049 N 0.486
CRE02943 Caenorhabditis remanei CRE02943 N 0.488
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.418
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.430
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.430
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.430
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N 0.461
CapteG158220 Capitella teleta CapteG158220 N 0.471
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.430
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.465
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.454
csin110255 Clonorchis sinensis csin110255 N 0.462
csin112095 Clonorchis sinensis csin112095 N 0.415
CGI_10023724 Crassostrea gigas CGI_10023724 N 0.445
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.478
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.478
hmgb2a Danio rerio ENSDARG00000029722 N 0.462
hmgb1a Danio rerio ENSDARG00000099175 N 0.422
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N 0.461
DAPPUDRAFT_306496 Daphnia pulex DAPPUDRAFT_306496 N 0.451
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.430
YQE_03203 Dendroctonus ponderosae YQE_03203 N 0.432
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N 0.460
nDi.2.2.2.g04979 Dirofilaria immitis nDi.2.2.2.g04979 N 0.475
DME_0001055201 Dracunculus medinensis DME_0001055201 N 0.462
GF19115 Drosophila ananassae FBgn0096126 N 0.478
GG17955 Drosophila erecta FBgn0110175 N 0.478
GH12282 Drosophila grimshawi FBgn0119761 N 0.478
Dsp1 Drosophila melanogaster FBgn0011764 N 0.478
GI10980 Drosophila mojavensis FBgn0133743 N 0.478
GA11488 Drosophila pseudoobscura FBgn0071539 N 0.478
GD17278 Drosophila simulans FBgn0188840 N 0.478
GJ19445 Drosophila virilis FBgn0206588 N 0.478
GK25058 Drosophila willistoni FBgn0227017 N 0.478
GE17263 Drosophila yakuba FBgn0234741 N 0.478
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.496
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.512
EEL_0000068601 Elaeophora elaphi EEL_0000068601 N 0.475
EVEC_0000577301 Enterobius vermicularis EVEC_0000577301 N 0.478
D915_00818 Fasciola hepatica D915_00818 N 0.482
D915_15256 Fasciola hepatica D915_15256 N 0.462
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.427
ENSGMOG00000010060 Gadus morhua ENSGMOG00000010060 N 0.425
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.431
HCOI00860100 Haemonchus contortus HCOI00860100 N 0.497
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N 0.461
HMEL007340 Heliconius melpomene HMEL007340 N 0.451
HelroG157726 Helobdella robusta HelroG157726 N 0.436
HelroG157878 Helobdella robusta HelroG157878 N 0.457
HelroG87827 Helobdella robusta HelroG87827 N 0.423
Hba_13817 Heterorhabditis bacteriophora Hba_13817 N 0.494
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.496
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.494
HDID_0000408601 Hymenolepis diminuta HDID_0000408601 N 0.445
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.494
HmN_000813000 Hymenolepis microstoma HmN_000813000 N 0.439
HNAJ_0000974401 Hymenolepis nana HNAJ_0000974401 N 0.443
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.494
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.469
ISCW017350 Ixodes scapularis ISCW017350 N 0.488
LDEC006842 Leptinotarsa decemlineata LDEC006842 N 0.429
LOAG_04936 Loa loa LOAG_04936 N 0.475
LotgiG200052 Lottia gigantea LotgiG200052 N 0.429
LCUP007363 Lucilia cuprina LCUP007363 N 0.478
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.436
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 N 0.488
genemark-nMf.1.1.scaf06964-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf06964-processed-gene-0.3 N 0.488
MhA1_Contig113.frz3.gene9 Meloidogyne hapla MhA1_Contig113.frz3.gene9 N 0.437
Minc03268 Meloidogyne incognita Minc03268 N 0.437
Minc08988 Meloidogyne incognita Minc08988 N 0.437
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.512
MCOS_0000726501 Mesocestoides corti MCOS_0000726501 N 0.423
MDOA008812 Musca domestica MDOA008812 N 0.464
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.434
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.450
NV15664 Nasonia vitripennis NV15664 N 0.461
NECAME_09126 Necator americanus NECAME_09126 N 0.497
NBR_0000911001 Nippostrongylus brasiliensis NBR_0000911001 N 0.497
WBGene00245261 Onchocerca volvulus WBGene00245261 N 0.475
T265_10726 Opisthorchis viverrini T265_10726 N 0.439
T265_12733 Opisthorchis viverrini T265_12733 N 0.478
T265_14643 Opisthorchis viverrini T265_14643 N 0.462
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N 0.428
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.428
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.450
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.419
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.416
ENSOCUG00000027747 Oryctolagus cuniculus ENSOCUG00000027747 N 0.430
hmgb1a Oryzias latipes ENSORLG00000003400 N 0.439
hmgb2b Oryzias latipes ENSORLG00000018687 N 0.428
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.450
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.416
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.450
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.450
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.450
PEQ_0000150901 Parascaris equorum PEQ_0000150901 N 0.478
PTRK_0000986200 Parastrongyloides trichosuri PTRK_0000986200 N 0.462
PHUM006290 Pediculus humanus PHUM006290 N 0.438
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N 0.481
ENSPFOG00000004794 Poecilia formosa ENSPFOG00000004794 N 0.431
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.473
scaffold580-EXSNAP2012.5 Pristionchus exspectatus scaffold580-EXSNAP2012.5 N 0.461
Ppa-hmg-1.2 Pristionchus pacificus PPA02361 N 0.461
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N 0.450
PXEA_0000637001 Protopolystoma xenopodis PXEA_0000637001 N 0.435
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.491
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.456
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.456
AABR07025074.1 Rattus norvegicus ENSRNOG00000032550 N 0.428
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.456
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.436
nRc.2.0.1.g43473 Romanomermis culicivorax nRc.2.0.1.g43473 N 0.468
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.470
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N 0.460
SSLN_0001302101 Schistocephalus solidus SSLN_0001302101 N 0.453
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.500
SCUD_0000067701 Schistosoma curassoni SCUD_0000067701 N 0.426
SCUD_0001034301 Schistosoma curassoni SCUD_0001034301 N 0.422
A_00070 Schistosoma haematobium A_00070 N 0.422
A_05510 Schistosoma haematobium A_05510 N 0.426
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.491
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N 0.425
Smp_000980 Schistosoma mansoni Smp_000980 N 0.500
Smp_100090 Schistosoma mansoni Smp_100090 N 0.434
Smp_103530 Schistosoma mansoni Smp_103530 N 0.426
SMRZ_0000146101 Schistosoma margrebowiei SMRZ_0000146101 N 0.426
SMRZ_0000842001 Schistosoma margrebowiei SMRZ_0000842001 N 0.422
SMRZ_0001808901 Schistosoma margrebowiei SMRZ_0001808901 N 0.426
SMTD_0001017101 Schistosoma mattheei SMTD_0001017101 N 0.422
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.500
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.500
SROB_0000500401 Schistosoma rodhaini SROB_0000500401 N 0.434
SROB_0001061001 Schistosoma rodhaini SROB_0001061001 N 0.426
SMU15002907 Schmidtea mediterranea SMU15002907 N 0.415
SMU15016767 Schmidtea mediterranea SMU15016767 N 0.500
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.423
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.476
SBAD_0000405201 Soboliphyme baturini SBAD_0000405201 N 0.470
SINV22586 Solenopsis invicta SINV22586 N 0.461
L596_g22130 Steinernema carpocapsae L596_g22130 N 0.475
L889_g13533 Steinernema feltiae L889_g13533 N 0.470
L893_g5947 Steinernema glaseri L893_g5947 N 0.475
L892_g17551 Steinernema scapterisci L892_g17551 N 0.475
SMAR013695 Strigamia maritima SMAR013695 N 0.488
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.513
SPAL_0001030300 Strongyloides papillosus SPAL_0001030300 N 0.462
SSTP_0000371800 Strongyloides stercoralis SSTP_0000371800 N 0.462
SVE_0494300 Strongyloides venezuelensis SVE_0494300 N 0.462
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.448
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.434
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.434
SMUV_0000232601 Syphacia muris SMUV_0000232601 N 0.481
TsM_000115400 Taenia solium TsM_000115400 N 0.512
hmgb2b Takifugu rubripes ENSTRUG00000005015 N 0.425
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.458
TELCIR_07111 Teladorsagia circumcincta TELCIR_07111 N 0.497
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.500
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.497
hmgb2b Tetraodon nigroviridis ENSTNIG00000004824 N 0.428
hmgb1a Tetraodon nigroviridis ENSTNIG00000009909 N 0.419
TCLT_0000879501 Thelazia callipaeda TCLT_0000879501 N 0.478
TCNE_0000567001 Toxocara canis TCNE_0000567001 N 0.478
D917_01254 Trichinella nativa D917_01254 N 0.435
D917_08189 Trichinella nativa D917_08189 N 0.461
EFV53345 Trichinella spiralis EFV53345 N 0.427
EFV57410 Trichinella spiralis EFV57410 N 0.435
TMUE_s0235000800 Trichuris muris TMUE_s0235000800 N 0.458
D918_07195 Trichuris suis D918_07195 N 0.473
TTRE_0000338301 Trichuris trichiura TTRE_0000338301 N 0.477
WUBG_12099 Wuchereria bancrofti WUBG_12099 N 0.446
AAH44009 Xenopus laevis AAH44009 N 0.423
BAA06440 Xenopus laevis BAA06440 N 0.420
AAI68534 Xenopus tropicalis AAI68534 N 0.453
ENSXMAG00000011106 Xiphophorus maculatus ENSXMAG00000011106 N 0.428