CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CpipJ_CPIJ004922 *(Culex pipiens)* T-box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00907 (T-box)	IPR001699	CpipJ_CPIJ004922	T339222_2.00	Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Doc2 M03992_2.00	Drosophila melanogaster	DRGGTGTBAN	NTVACACCYH	SELEX Nitta et al.(2015) Doc2_1	0.820	0.779
Doc2 M03993_2.00	Drosophila melanogaster	NAGGTGTBAN	NTVACACCTN	SELEX Nitta et al.(2015) Doc2_2	0.820	0.779
Doc2 M06454_2.00	Drosophila melanogaster	ARGYGTGAA	TTCACRCYT	B1H Zhu et al.(2011) Doc2_SANGER_5_FBgn0035956	0.820	0.779
Doc3 M03990_2.00	Drosophila melanogaster	NRGGTGTBAD	HTVACACCYN	SELEX Nitta et al.(2015) Doc3_1	0.781	0.757
Doc3 M03991_2.00	Drosophila melanogaster	DAGGTGTBAN	NTVACACCTH	SELEX Nitta et al.(2015) Doc3_2	0.781	0.757
For this family, TFs with SR scores > 0.734* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CpipJ_CPIJ004922-RA	T-box	50	230	VKLQNRDMWSDFHRIGTEMIITKSGRRMFPSMRLSFNGLEADENYCVLIEMVPISDCRFKFSGSQWVPAGGAEPQSPQRFYQHPDSPALGSHWTSQPVNFNKVKLTNNTLDSNGHIVLTSMHKYQPRIHVIKASEREHFAWAPQSSFTFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRE

Links
Other T-box family TFs
Other *Culex pipiens* TFs