tbx20 (Ciona intestinalis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSCING00000005267 T339690_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx20
M00835_2.00 		Mus musculus
NRRGTGTBAN
NTVACACYYN		 PBM
Weirauch et al.(2013)
pTH3777 		0.859 0.797
TBX20
M03565_2.00 		Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_1 		0.859 0.797
TBX20
M03566_2.00 		Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT		 SELEX
Jolma et al.(2013)
TBX20_2 		0.859 0.797
TBX20
M03567_2.00 		Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN		 SELEX
Jolma et al.(2013)
TBX20_3 		0.859 0.797
TBX20
M03568_2.00 		Homo sapiens
DAGGTGTGAWR
YWTCACACCTH		 SELEX
Jolma et al.(2013)
TBX20_4 		0.859 0.797
TBX20
M03569_2.00 		Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_5 		0.859 0.797
TBX20
M05813_2.00 		Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1 		0.859 0.797
TBX20
M05814_2.00 		Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2 		0.859 0.797
TBX20
M05817_2.00 		Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1 		0.859 0.797
TBX20
M05818_2.00 		Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2 		0.859 0.797
Tbx20
M09430_2.00 		Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN		 Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C 		0.859 0.797
Tbx20
M09650_2.00 		Mus musculus
SCTGTCADCASN
NSTGHTGACAGS		 Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636 		0.859 0.797
TBX20
M11385_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX20_05 		0.859 0.797
TBX20
M05815_2.00 		Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1 		0.859 0.797
TBX20
M05816_2.00 		Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2 		0.859 0.797
TBX20
M05819_2.00 		Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1 		0.859 0.797
TBX20
M05820_2.00 		Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2 		0.859 0.797
mid
M03994_2.00 		Drosophila melanogaster
DAGGTGTKAN
NTMACACCTH		 SELEX
Nitta et al.(2015)
mid_1 		0.786 0.676
TBX15
M03554_2.00 		Homo sapiens
AGGTGTGAAATTCACACCT
AGGTGTGAATTTCACACCT		 SELEX
Jolma et al.(2013)
TBX15_1 		0.755 0.637
TBX15
M03555_2.00 		Homo sapiens
AGGTGTGA
TCACACCT		 SELEX
Jolma et al.(2013)
TBX15_2 		0.755 0.637
TBX15
M05795_2.00 		Homo sapiens
NRSGTGTBAN
NTVACACSYN		 SELEX
Yin et al.(2017)
TBX15_eDBD_HT-SELEX 		0.755 0.637
TBX15
M11378_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX15_01 		0.755 0.637
TBX15
M11379_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX15_02 		0.755 0.637
TBX15
M05796_2.00 		Homo sapiens
NDSGYGTBAN
NTVACRCSHN		 SELEX
Yin et al.(2017)
TBX15_eDBD_Methyl-HT-SELEX 		0.755 0.637
TBX18
M05797_2.00 		Homo sapiens
DDAGGTGTGARV
BYTCACACCTHH		 SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX 		0.751 0.643
TBX18
M11380_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX18_01 		0.751 0.643
TBX18
M05798_2.00 		Homo sapiens
NDAGGYGTGAAN
NTTCACRCCTHN		 SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX 		0.751 0.643
XP_001195863
M02498_2.00 		Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2014)
pTH9340 		0.740 0.626
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000010822 T-box 106 292

Links

Other T-box family TFs
Other Ciona intestinalis TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32151 Aegilops tauschii F775_32151 N 0.000
MYB21 Arabidopsis thaliana AT3G27810 I 0.000
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.000
MYB27 Arabidopsis thaliana AT3G53200 D 0.000
MYB86 Arabidopsis thaliana AT5G26660 I 0.000
TT2 Arabidopsis thaliana AT5G35550 I 0.000
MYB24 Arabidopsis thaliana AT5G40350 D 0.000
MYB59 Arabidopsis thaliana AT5G59780 D 0.000
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.000
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.000
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.000
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.000
Bra009910 Brassica rapa Bra009910 N 0.000
PK27824.1 Cannabis sativa PK27824.1 N 0.000
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.000
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.000
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.000
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.000
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.000
Cla023001 Citrullus lanatus Cla023001 N 0.000
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.000
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.000
Cucsa.089670 Cucumis sativus Cucsa.089670 N 0.000
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.000
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.000
Eucgr.J00892 Eucalyptus grandis Eucgr.J00892 N 0.000
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.000
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.000
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.000
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.000
GLYMA14G10483 Glycine max GLYMA14G10483 I 0.000
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.000
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.000
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.000
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.000
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.000
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.000
LjSGA_067208.1 Lotus japonicus LjSGA_067208.1 N 0.000
LjSGA_148662.1 Lotus japonicus LjSGA_148662.1 N 0.000
MDP0000139931 Malus domestica MDP0000139931 N 0.000
MDP0000169874 Malus domestica MDP0000169874 N 0.000
MDP0000244980 Malus domestica MDP0000244980 N 0.000
MDP0000470422 Malus domestica MDP0000470422 N 0.000
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.000
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.000
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.000
mgf001247m Mimulus guttatus mgf001247m N 0.000
mgf024109m Mimulus guttatus mgf024109m N 0.000
mgf021749m Mimulus guttatus mgf021749m N 0.000
mgf009707m Mimulus guttatus mgf009707m N 0.000
mgf018110m Mimulus guttatus mgf018110m N 0.000
OBART12G16130 Oryza barthii OBART12G16130 N 0.000
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.000
BGIOSGA002307 Oryza indica BGIOSGA002307 N 0.000
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.000
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.000
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.000
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.000
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.000
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.000
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.000
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.000
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.000
PDK_20s1933711g001 Phoenix dactylifera PDK_20s1933711g001 N 0.000
PDK_20s1316381g001 Phoenix dactylifera PDK_20s1316381g001 N 0.000
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.000
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.000
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.000
PDK_20s1675721g001 Phoenix dactylifera PDK_20s1675721g001 N 0.000
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.000
Pm005451 Prunus mume Pm005451 N 0.000
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.000
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.000
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.000
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.000
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.000
SapurV1A.0004s0360 Salix purpurea SapurV1A.0004s0360 I 0.000
PGSC0003DMG400013172 Solanum tuberosum PGSC0003DMG400013172 N 0.000
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.000
TCM_021433 Theobroma cacao TCM_021433 I 0.000
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.000
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.000
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.000
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.000
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.000
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.000
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.000
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.000
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.000
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.000
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.000