GA18682 (Drosophila pseudoobscura)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 FBgn0078682 T340635_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Doc3
M03990_2.00
Drosophila melanogaster
NRGGTGTBAD

HTVACACCYN
SELEX
Nitta et al.(2015)
Doc3_1
0.871 0.923
Doc3
M03991_2.00
Drosophila melanogaster
DAGGTGTBAN

NTVACACCTH
SELEX
Nitta et al.(2015)
Doc3_2
0.871 0.923
Doc2
M03992_2.00
Drosophila melanogaster
DRGGTGTBAN

NTVACACCYH
SELEX
Nitta et al.(2015)
Doc2_1
0.867 0.873
Doc2
M03993_2.00
Drosophila melanogaster
NAGGTGTBAN

NTVACACCTN
SELEX
Nitta et al.(2015)
Doc2_2
0.867 0.873
Doc2
M06454_2.00
Drosophila melanogaster
ARGYGTGAA

TTCACRCYT
B1H
Zhu et al.(2011)
Doc2_SANGER_5_FBgn0035956
0.867 0.873
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN

NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.745 0.602
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN

NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.745 0.597
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0288324 T-box 59 239

Links

Other T-box family TFs
Other Drosophila pseudoobscura TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_10624 Aegilops tauschii F775_10624 N 0.000
F775_18830 Aegilops tauschii F775_18830 N 0.000
F775_19744 Aegilops tauschii F775_19744 N 0.000
MLOC_38470 Hordeum vulgare MLOC_38470 N 0.000
LPERR04G17380 Leersia perrieri LPERR04G17380 N 0.000
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.000
LPERR08G11070 Leersia perrieri LPERR08G11070 N 0.000
OBART04G21370 Oryza barthii OBART04G21370 N 0.000
OBART04G21320 Oryza barthii OBART04G21320 N 0.000
OBART01G20350 Oryza barthii OBART01G20350 N 0.000
OB04G28390 Oryza brachyantha OB04G28390 N 0.000
OB04G28380 Oryza brachyantha OB04G28380 N 0.000
OB01G30110 Oryza brachyantha OB01G30110 N 0.000
OB04G28350 Oryza brachyantha OB04G28350 N 0.000
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N 0.000
ORGLA04G0183900 Oryza glaberrima ORGLA04G0183900 N 0.000
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N 0.000
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N 0.000
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N 0.000
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N 0.000
BGIOSGA015472 Oryza indica BGIOSGA015472 N 0.000
BGIOSGA014567 Oryza indica BGIOSGA014567 N 0.000
BGIOSGA014566 Oryza indica BGIOSGA014566 N 0.000
BGIOSGA014565 Oryza indica BGIOSGA014565 N 0.000
BGIOSGA003819 Oryza indica BGIOSGA003819 N 0.000
BGIOSGA003821 Oryza indica BGIOSGA003821 N 0.000
OLONG_009946 Oryza longistaminata OLONG_009946 N 0.000
OLONG_016958 Oryza longistaminata OLONG_016958 N 0.000
OLONG_016960 Oryza longistaminata OLONG_016960 N 0.000
OMERI01G18770 Oryza meridionalis OMERI01G18770 N 0.000
OMERI04G17820 Oryza meridionalis OMERI04G17820 N 0.000
OMERI04G17790 Oryza meridionalis OMERI04G17790 N 0.000
ONIVA04G19650 Oryza nivara ONIVA04G19650 N 0.000
ONIVA04G19860 Oryza nivara ONIVA04G19860 N 0.000
ONIVA01G22980 Oryza nivara ONIVA01G22980 N 0.000
OPUNC04G19030 Oryza punctata OPUNC04G19030 N 0.000
OPUNC04G19040 Oryza punctata OPUNC04G19040 N 0.000
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N 0.000
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N 0.000
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N 0.000
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N 0.000
OS04G0557200 Oryza sativa OS04G0557200 N 0.000
OS04G0557800 Oryza sativa OS04G0557800 N 0.000
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N 0.000
Pavir.J34298 Panicum virgatum Pavir.J34298 N 0.000
Si000845m.g Setaria italica Si000845m.g I 0.000
Si012401m.g Setaria italica Si012401m.g I 0.000
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.000
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.000
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N 0.000
TRIUR3_18279 Triticum urartu TRIUR3_18279 N 0.000
TRIUR3_26157 Triticum urartu TRIUR3_26157 N 0.000
TRIUR3_35186 Triticum urartu TRIUR3_35186 N 0.000
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.000