Ogr19099 (Ophisaurus gracilis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 Ogr19099 T341139_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
T
M05809_2.00 		Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1 		0.906 0.972
T
M05810_2.00 		Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2 		0.906 0.972
T
M09427_2.00 		Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV		 Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A 		0.906 0.972
T
M11384_2.00 		Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK		 Transfac
Matys et al.(2006)
V$BRACH_01 		0.906 0.972
T
M05811_2.00 		Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1 		0.906 0.972
T
M05812_2.00 		Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2 		0.906 0.972
T
M09431_2.00 		Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB		 Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B 		0.906 0.966
T
M09651_2.00 		Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN		 Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963 		0.906 0.966
TBX19
M03562_2.00 		Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN		 SELEX
Jolma et al.(2013)
TBX19_1 		0.881 0.852
TBX19
M05803_2.00 		Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX 		0.881 0.852
TBX19
M05804_2.00 		Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX 		0.881 0.852
byn
M03984_2.00 		Drosophila melanogaster
ABGTGYGADDD
HHHTCRCACVT		 SELEX
Nitta et al.(2015)
byn_1 		0.815 0.756
byn
M03985_2.00 		Drosophila melanogaster
DNGTGYBAHWWDTVRCACNH
DNGTGYBAHWWDTVRCACNH		 SELEX
Nitta et al.(2015)
byn_2 		0.815 0.756
byn
M03986_2.00 		Drosophila melanogaster
RDGTGYGADNDNDNNNNNNDRDGTGYGADD
HHTCRCACHYHNNNNNNHNHNHTCRCACHY		 SELEX
Nitta et al.(2015)
byn_3 		0.815 0.756
byn
M03987_2.00 		Drosophila melanogaster
NNTMRCAYNWWNRTGYKAHN
NDTMRCAYNWWNRTGYKANN		 SELEX
Nitta et al.(2015)
byn_4 		0.815 0.756
byn
M06453_2.00 		Drosophila melanogaster
ADGTGCDA
THGCACHT		 B1H
Zhu et al.(2011)
byn_FlyReg_FBgn0011723 		0.815 0.756
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr19099 T-box 44 219

Links

Other T-box family TFs
Other Ophisaurus gracilis TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSACAG00000004870 Anolis carolinensis ENSACAG00000004870 I 0.000
Afo_R006429 Aptenodytes forsteri Afo_R006429 I 0.000
estExt_fgenesh2_pg.C_170078 Branchiostoma floridae estExt_fgenesh2_pg.C_170078 I 0.000
CRE08474 Caenorhabditis remanei CRE08474 N 0.000
CRE31308 Caenorhabditis remanei CRE31308 N 0.000
Aan_R012851 Calypte anna Aan_R012851 I 0.000
CapteG222987 Capitella teleta CapteG222987 I 0.000
csin105615 Clonorchis sinensis csin105615 I 0.000
EmuJ_000217500 Echinococcus multilocularis EmuJ_000217500 N 0.000
ECPE_0000936301 Echinostoma caproni ECPE_0000936301 N 0.000
TTAC_0000041401 Hydatigera taeniaeformis TTAC_0000041401 N 0.000
HDID_0000136701 Hymenolepis diminuta HDID_0000136701 N 0.000
HmN_000727400 Hymenolepis microstoma HmN_000727400 N 0.000
HNAJ_0001272501 Hymenolepis nana HNAJ_0001272501 N 0.000
ENSLACG00000016329 Latimeria chalumnae ENSLACG00000016329 I 0.000
MCOS_0000774901 Mesocestoides corti MCOS_0000774901 N 0.000
T265_08863 Opisthorchis viverrini T265_08863 I 0.000
SCUD_0000195401 Schistosoma curassoni SCUD_0000195401 N 0.000
A_01907 Schistosoma haematobium A_01907 N 0.000
A_01406 Schistosoma haematobium A_01406 I 0.000
Smp_098780 Schistosoma mansoni Smp_098780 N 0.000
SMRZ_0002246801 Schistosoma margrebowiei SMRZ_0002246801 N 0.000
SROB_0001069101 Schistosoma rodhaini SROB_0001069101 N 0.000
TsM_001176500 Taenia solium TsM_001176500 N 0.000
TriadG17444 Trichoplax adhaerens TriadG17444 I 0.000
Tal_R007079 Tyto alba Tal_R007079 I 0.000