GSMUA_Achr6G29890_001 (Musa acuminata)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 GSMUA_Achr6G29890_001 T342588_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.737 0.737
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.737 0.737
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.737 0.737
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.737 0.737
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.737 0.737
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.737 0.737
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.737 0.737
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.737 0.737
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.737 0.737
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.737 0.737
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.719 0.719
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.719 0.719
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr6P29890_001 TBP 20 102
GSMUA_Achr6P29890_001 TBP 110 193

Links

Other TBP family TFs
Other Musa acuminata TFs

624 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_24151 Aegilops tauschii F775_24151 I 0.000
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.000
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.000
BHLH122 Arabidopsis thaliana AT1G51140 D 0.000
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.000
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.000
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.000
Bo4g015860 Brassica oleracea Bo4g015860 I 0.000
Bo4g191390 Brassica oleracea Bo4g191390 I 0.000
Bo6g024810 Brassica oleracea Bo6g024810 I 0.000
Bra004678 Brassica rapa Bra004678 I 0.000
Bra016886 Brassica rapa Bra016886 I 0.000
Bra018896 Brassica rapa Bra018896 I 0.000
PK18038.1 Cannabis sativa PK18038.1 I 0.000
PK20089.1 Cannabis sativa PK20089.1 I 0.000
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.000
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.000
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.000
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.000
Ca_02662 Cicer arietinum Ca_02662 I 0.000
Ca_18899 Cicer arietinum Ca_18899 I 0.000
Cla006394 Citrullus lanatus Cla006394 I 0.000
Cla017792 Citrullus lanatus Cla017792 I 0.000
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.000
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.000
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.000
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.000
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.000
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.000
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.000
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.000
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.000
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.000
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.000
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.000
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.000
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.000
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.000
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.000
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.000
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.000
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.000
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.000
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.000
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.000
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.000
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.000
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.000
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.000
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.000
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.000
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.000
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.000
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.000
MDP0000180376 Malus domestica MDP0000180376 I 0.000
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.000
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.000
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.000
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.000
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.000
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.000
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.000
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.000
mgf016092m Mimulus guttatus mgf016092m I 0.000
mgf016734m Mimulus guttatus mgf016734m I 0.000
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.000
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.000
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.000
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.000
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.000
OBART02G23210 Oryza barthii OBART02G23210 I 0.000
OBART08G19860 Oryza barthii OBART08G19860 I 0.000
OBART09G14660 Oryza barthii OBART09G14660 I 0.000
OB02G30670 Oryza brachyantha OB02G30670 I 0.000
OB08G26810 Oryza brachyantha OB08G26810 I 0.000
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.000
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.000
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.000
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.000
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.000
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.000
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.000
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.000
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.000
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.000
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.000
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.000
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.000
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.000
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.000
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.000
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.000
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.000
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.000
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.000
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.000
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.000
OS08G0506700 Oryza sativa OS08G0506700 D 0.000
OS09G0487900 Oryza sativa OS09G0487900 I 0.000
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.000
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.000
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.000
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.000
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.000
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.000
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.000
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.000
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.000
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.000
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.000
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.000
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.000
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.000
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.000
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.000
e_gw1.273.42.1 Physcomitrella patens e_gw1.273.42.1 I 0.000
fgenesh1_pg.scaffold_155000050 Physcomitrella patens fgenesh1_pg.scaffold_155000050 I 0.000
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.000
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.000
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.000
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.000
Pm000447 Prunus mume Pm000447 I 0.000
Pm025821 Prunus mume Pm025821 I 0.000
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.000
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.000
29216.m000261 Ricinus communis 29216.m000261 I 0.000
30152.m002405 Ricinus communis 30152.m002405 I 0.000
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.000
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.000
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.000
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.000
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.000
SELMODRAFT_402301 Selaginella moellendorffii SELMODRAFT_402301 I 0.000
Si010513m.g Setaria italica Si010513m.g I 0.000
Si013950m.g Setaria italica Si013950m.g I 0.000
Si029614m.g Setaria italica Si029614m.g I 0.000
Si030166m.g Setaria italica Si030166m.g I 0.000
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.000
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.000
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.000
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.000
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.000
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.000
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.000
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.000
TCM_005925 Theobroma cacao TCM_005925 I 0.000
TCM_024842 Theobroma cacao TCM_024842 I 0.000
TCM_040564 Theobroma cacao TCM_040564 I 0.000
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.000
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.000
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.000
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.000
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.000
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.000
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.000
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.000
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.000
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.000
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.000