Bo6g099040 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo6g099040 T343748_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.939 0.590
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.875 0.346
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.859 0.372
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g099040.1 TCP 85 240

Links

Other TCP family TFs
Other Brassica oleracea TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.838
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.855
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.858
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.930
BRC2 Arabidopsis thaliana AT1G68800 I 0.851
TCP1 Arabidopsis thaliana AT1G67260 D 0.939
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.859
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.920
Bo2g055640 Brassica oleracea Bo2g055640 I 0.934
Bo2g061250 Brassica oleracea Bo2g061250 I 0.840
Bo6g103670 Brassica oleracea Bo6g103670 I 0.952
Bra034010 Brassica rapa Bra034010 I 0.934
Bra004097 Brassica rapa Bra004097 I 0.941
Bra004212 Brassica rapa Bra004212 I 0.962
Bra038350 Brassica rapa Bra038350 I 0.840
PK19717.1 Cannabis sativa PK19717.1 D 0.859
PK12240.1 Cannabis sativa PK12240.1 D 0.875
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.918
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.859
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.859
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.909
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.915
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.874
Cla007227 Citrullus lanatus Cla007227 I 0.880
Cla002355 Citrullus lanatus Cla002355 I 0.845
Cla016709 Citrullus lanatus Cla016709 I 0.903
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.857
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.857
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.866
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.897
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.906
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.898
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.826
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.944
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.862
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.891
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.859
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.878
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.894
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.877
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.859
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.828
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.849
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.843
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.905
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.835
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.832
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.846
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.841
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.876
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.874
MDP0000272980 Malus domestica MDP0000272980 I 0.838
MDP0000173048 Malus domestica MDP0000173048 I 0.869
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.838
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.827
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.881
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.888
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.846
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.833
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.891
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.872
mgf019480m Mimulus guttatus mgf019480m I 0.887
mgf022233m Mimulus guttatus mgf022233m I 0.855
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.864
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.875
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.824
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.822
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.884
Pm029002 Prunus mume Pm029002 I 0.850
Pm015499 Prunus mume Pm015499 I 0.875
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.850
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.880
29738.m001041 Ricinus communis 29738.m001041 I 0.873
30167.m000856 Ricinus communis 30167.m000856 I 0.884
30174.m008721 Ricinus communis 30174.m008721 I 0.827
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.869
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.884
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.851
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.841
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.855
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.856
TCM_011874 Theobroma cacao TCM_011874 I 0.845
TCM_019518 Theobroma cacao TCM_019518 I 0.902
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.846
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.891