PGSC0003DMG400024254 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400024254 T344268_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.965 0.718
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.965 0.718
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.965 0.709
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.963 0.738
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.963 0.738
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.963 0.738
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.963 0.718
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.963 0.718
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.962 0.650
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.961 0.738
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.955 0.583
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.955 0.592
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.955 0.544
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.955 0.544
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.955 0.544
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.955 0.544
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.955 0.544
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.954 0.583
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.954 0.583
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.954 0.583
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.954 0.583
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.951 0.573
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.948 0.563
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.948 0.544
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.940 0.553
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.937 0.553
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.937 0.553
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.936 0.573
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.924 0.524
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.924 0.524
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.922 0.505
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.920 0.495
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.919 0.485
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.889 0.447
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.889 0.447
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400062327 TCP 91 203

Links

Other TCP family TFs
Other Solanum tuberosum TFs

647 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10096 Aegilops tauschii F775_10096 I 0.000
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.000
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I 0.000
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I 0.000
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N 0.000
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I 0.000
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I 0.000
BHLH30 Arabidopsis thaliana AT1G68810 I 0.000
BHLH32 Arabidopsis thaliana AT3G25710 I 0.000
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I 0.000
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I 0.000
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.000
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N 0.000
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N 0.000
Bo2g138630 Brassica oleracea Bo2g138630 I 0.000
Bo6g095860 Brassica oleracea Bo6g095860 I 0.000
Bo6g108270 Brassica oleracea Bo6g108270 I 0.000
Bo7g081980 Brassica oleracea Bo7g081980 I 0.000
Bra004015 Brassica rapa Bra004015 I 0.000
Bra004338 Brassica rapa Bra004338 I 0.000
Bra025158 Brassica rapa Bra025158 I 0.000
Bra026510 Brassica rapa Bra026510 I 0.000
PK01498.1 Cannabis sativa PK01498.1 N 0.000
PK07858.1 Cannabis sativa PK07858.1 D 0.000
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I 0.000
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I 0.000
Carubv10017470m.g Capsella rubella Carubv10017470m.g I 0.000
Carubv10020515m.g Capsella rubella Carubv10020515m.g I 0.000
evm.TU.supercontig_21.7 Carica papaya evm.TU.supercontig_21.7 N 0.000
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I 0.000
evm.TU.supercontig_55.51 Carica papaya evm.TU.supercontig_55.51 N 0.000
Ca_02482 Cicer arietinum Ca_02482 N 0.000
Ca_08440 Cicer arietinum Ca_08440 I 0.000
Ca_14981 Cicer arietinum Ca_14981 N 0.000
Ca_18110 Cicer arietinum Ca_18110 N 0.000
Ca_19863 Cicer arietinum Ca_19863 N 0.000
Ca_24775 Cicer arietinum Ca_24775 I 0.000
Cla000223 Citrullus lanatus Cla000223 I 0.000
Cla020671 Citrullus lanatus Cla020671 I 0.000
Cla022500 Citrullus lanatus Cla022500 N 0.000
Ciclev10002205m.g Citrus clementina Ciclev10002205m.g N 0.000
Ciclev10020323m.g Citrus clementina Ciclev10020323m.g I 0.000
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I 0.000
orange1.1g022782m.g Citrus sinensis orange1.1g022782m.g I 0.000
orange1.1g024930m.g Citrus sinensis orange1.1g024930m.g N 0.000
orange1.1g026943m.g Citrus sinensis orange1.1g026943m.g I 0.000
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I 0.000
Cucsa.160650 Cucumis sativus Cucsa.160650 N 0.000
Cucsa.283920 Cucumis sativus Cucsa.283920 I 0.000
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I 0.000
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I 0.000
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I 0.000
GLYMA01G02930 Glycine max GLYMA01G02930 N 0.000
GLYMA01G22530 Glycine max GLYMA01G22530 I 0.000
GLYMA02G11190 Glycine max GLYMA02G11190 I 0.000
GLYMA02G37720 Glycine max GLYMA02G37720 N 0.000
GLYMA06G43560 Glycine max GLYMA06G43560 N 0.000
GLYMA10G34910 Glycine max GLYMA10G34910 I 0.000
GLYMA12G14400 Glycine max GLYMA12G14400 N 0.000
GLYMA14G36010 Glycine max GLYMA14G36010 N 0.000
GLYMA17G19570 Glycine max GLYMA17G19570 I 0.000
GLYMA20G32660 Glycine max GLYMA20G32660 I 0.000
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I 0.000
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N 0.000
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I 0.000
MLOC_12832 Hordeum vulgare MLOC_12832 N 0.000
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.000
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.000
LPERR09G06880 Leersia perrieri LPERR09G06880 I 0.000
Lus10021711.g Linum usitatissimum Lus10021711.g I 0.000
Lus10034271.g Linum usitatissimum Lus10034271.g I 0.000
Lus10035056.g Linum usitatissimum Lus10035056.g I 0.000
Lus10041493.g Linum usitatissimum Lus10041493.g I 0.000
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I 0.000
LjT46P06.140.nd Lotus japonicus LjT46P06.140.nd N 0.000
MDP0000271420 Malus domestica MDP0000271420 I 0.000
MDP0000319726 Malus domestica MDP0000319726 I 0.000
MDP0000562627 Malus domestica MDP0000562627 N 0.000
cassava16550.m1 Manihot esculenta cassava16550.m1 I 0.000
cassava34286.m1 Manihot esculenta cassava34286.m1 N 0.000
cassava46299.m1 Manihot esculenta cassava46299.m1 I 0.000
MTR_1g093750 Medicago truncatula MTR_1g093750 I 0.000
MTR_5g066080 Medicago truncatula MTR_5g066080 N 0.000
mg025182m Mimulus guttatus mg025182m I 0.000
mgf017635m Mimulus guttatus mgf017635m I 0.000
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I 0.000
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.000
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N 0.000
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I 0.000
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I 0.000
OBART03G11320 Oryza barthii OBART03G11320 I 0.000
OBART08G15650 Oryza barthii OBART08G15650 I 0.000
OB03G21490 Oryza brachyantha OB03G21490 I 0.000
OB09G16590 Oryza brachyantha OB09G16590 N 0.000
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.000
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I 0.000
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.000
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I 0.000
OGLUM09G10310 Oryza glumaepatula OGLUM09G10310 N 0.000
BGIOSGA026937 Oryza indica BGIOSGA026937 I 0.000
BGIOSGA029777 Oryza indica BGIOSGA029777 I 0.000
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.000
OLONG_011765 Oryza longistaminata OLONG_011765 N 0.000
OMERI08G12930 Oryza meridionalis OMERI08G12930 I 0.000
OMERI09G07780 Oryza meridionalis OMERI09G07780 I 0.000
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.000
ONIVA08G16750 Oryza nivara ONIVA08G16750 I 0.000
ONIVA09G09550 Oryza nivara ONIVA09G09550 I 0.000
OPUNC08G13730 Oryza punctata OPUNC08G13730 I 0.000
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.000
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I 0.000
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I 0.000
OS03G0260600 Oryza sativa OS03G0260600 I 0.000
OS08G0432800 Oryza sativa OS08G0432800 I 0.000
OS09G0410700 Oryza sativa OS09G0410700 I 0.000
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N 0.000
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N 0.000
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.000
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I 0.000
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I 0.000
POPTR_0013s12190 Populus trichocarpa POPTR_0013s12190 N 0.000
POPTR_0019s11870 Populus trichocarpa POPTR_0019s11870 N 0.000
Pm029004 Prunus mume Pm029004 I 0.000
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I 0.000
PRUPE_ppa026166mg Prunus persica PRUPE_ppa026166mg N 0.000
29646.m001078 Ricinus communis 29646.m001078 N 0.000
29738.m001043 Ricinus communis 29738.m001043 I 0.000
29908.m006255 Ricinus communis 29908.m006255 N 0.000
SapurV1A.0004s1200 Salix purpurea SapurV1A.0004s1200 N 0.000
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I 0.000
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I 0.000
SapurV1A.0958s0180 Salix purpurea SapurV1A.0958s0180 N 0.000
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I 0.000
SapurV1A.3655s0010 Salix purpurea SapurV1A.3655s0010 N 0.000
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I 0.000
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I 0.000
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I 0.000
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I 0.000
Si013911m.g Setaria italica Si013911m.g I 0.000
Si030496m.g Setaria italica Si030496m.g N 0.000
Si039730m.g Setaria italica Si039730m.g I 0.000
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I 0.000
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N 0.000
Solyc04g078690.2 Solanum lycopersicum Solyc04g078690.2 I 0.000
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I 0.000
Solyc07g005400.2 Solanum lycopersicum Solyc07g005400.2 I 0.000
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I 0.000
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I 0.000
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N 0.000
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.000
Sb02g024460 Sorghum bicolor Sb02g024460 N 0.000
Sb07g021170 Sorghum bicolor Sb07g021170 I 0.000
TCM_000997 Theobroma cacao TCM_000997 N 0.000
TCM_011873 Theobroma cacao TCM_011873 I 0.000
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.000
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.000
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.000
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N 0.000
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.000
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I 0.000
VIT_18s0001g07410 Vitis vinifera VIT_18s0001g07410 N 0.000
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.000
GRMZM2G107276 Zea mays GRMZM2G107276 I 0.000
GRMZM2G176141 Zea mays GRMZM2G176141 N 0.000
GRMZM2G526668 Zea mays GRMZM2G526668 I 0.000