Solyc04g009180.1 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc04g009180.1 T344411_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.971 0.667
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.968 0.649
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.968 0.649
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.958 0.577
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.955 0.586
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.955 0.586
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.954 0.586
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.953 0.550
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.953 0.559
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.953 0.559
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.951 0.577
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.948 0.541
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.948 0.541
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.948 0.541
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.948 0.541
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.947 0.504
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.944 0.541
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.942 0.504
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.941 0.514
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.940 0.523
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.939 0.541
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.934 0.514
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.933 0.504
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.933 0.504
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.933 0.504
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.933 0.504
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.932 0.495
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.931 0.477
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.931 0.477
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.931 0.495
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.931 0.495
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.931 0.495
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.931 0.486
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.856 0.423
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.856 0.423
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g009180.1.1 TCP 36 169

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

646 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI003588 Acyrthosiphon pisum ACYPI003588 I 0.000
ACYPI005133 Acyrthosiphon pisum ACYPI005133 I 0.000
REL1B Aedes aegypti AAEL006930 I 0.000
REL1A Aedes aegypti AAEL007696 I 0.000
AARA011865 Anopheles arabiensis AARA011865 I 0.000
AATE006484 Anopheles atroparvus AATE006484 I 0.000
ACHR009253 Anopheles christyi ACHR009253 I 0.000
ACOM032427 Anopheles coluzzii ACOM032427 I 0.000
ACUA016711 Anopheles culicifacies ACUA016711 I 0.000
ADAC001392 Anopheles darlingi ADAC001392 I 0.000
ADIR006013 Anopheles dirus ADIR006013 I 0.000
AEPI001360 Anopheles epiroticus AEPI001360 I 0.000
AFAF001010 Anopheles farauti AFAF001010 I 0.000
AFUN005302 Anopheles funestus AFUN005302 I 0.000
REL1 Anopheles gambiae AGAP009515 I 0.000
AMAM007568 Anopheles maculatus AMAM007568 I 0.000
AMEC000206 Anopheles melas AMEC000206 I 0.000
AMEM007632 Anopheles merus AMEM007632 I 0.000
AMIN001887 Anopheles minimus AMIN001887 I 0.000
AQUA005813 Anopheles quadriannulatus AQUA005813 I 0.000
ASTEI03826 Anopheles stephensi ASTEI03826 I 0.000
GB44031 Apis mellifera GB44031 I 0.000
ACEP24572 Atta cephalotes ACEP24572 I 0.000
Cflo_08314--NP_001011577.1_APIME Camponotus floridanus Cflo_08314--NP_001011577.1_APIME I 0.000
CLEC006384 Cimex lectularius CLEC006384 I 0.000
CpipJ_CPIJ015741 Culex pipiens CpipJ_CPIJ015741 I 0.000
CpipJ_CPIJ002469 Culex pipiens CpipJ_CPIJ002469 I 0.000
CpipJ_CPIJ019376 Culex pipiens CpipJ_CPIJ019376 I 0.000
CPIJ002469 Culex quinquefasciatus CPIJ002469 I 0.000
CPIJ015741 Culex quinquefasciatus CPIJ015741 I 0.000
CPIJ019376 Culex quinquefasciatus CPIJ019376 I 0.000
KGM_12899 Danaus plexippus KGM_12899 I 0.000
DAPPUDRAFT_52849 Daphnia pulex DAPPUDRAFT_52849 I 0.000
GF15103 Drosophila ananassae FBgn0092128 I 0.000
GG21746 Drosophila erecta FBgn0113924 I 0.000
GH10077 Drosophila grimshawi FBgn0117558 I 0.000
dl Drosophila melanogaster FBgn0260632 D 0.000
GI16541 Drosophila mojavensis FBgn0139289 I 0.000
GA19765 Drosophila pseudoobscura FBgn0079761 I 0.000
GM17128 Drosophila sechellia FBgn0172039 I 0.000
dl Drosophila simulans FBgn0067500 I 0.000
GJ16232 Drosophila virilis FBgn0203417 I 0.000
GK10525 Drosophila willistoni FBgn0212540 I 0.000
dl Drosophila yakuba FBgn0067431 I 0.000
Hsal_01917--NP_001011577.1_APIME Harpegnathos saltator Hsal_01917--NP_001011577.1_APIME I 0.000
RELA Homo sapiens ENSG00000173039 D 0.000
LDEC008474 Leptinotarsa decemlineata LDEC008474 I 0.000
LCUP010248 Lucilia cuprina LCUP010248 I 0.000
LCUP010246 Lucilia cuprina LCUP010246 I 0.000
MDOA008285 Musca domestica MDOA008285 I 0.000
PHUM534140 Pediculus humanus PHUM534140 I 0.000
PPAI001149 Phlebotomus papatasi PPAI001149 I 0.000
RPRC003790 Rhodnius prolixus RPRC003790 I 0.000
RPRC001614 Rhodnius prolixus RPRC001614 I 0.000
SINV14836 Solenopsis invicta SINV14836 I 0.000
tetur11g04270 Tetranychus urticae tetur11g04270 I 0.000
TC007697 Tribolium castaneum TC007697 I 0.000
L798_11048 Zootermopsis nevadensis L798_11048 I 0.000