CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cla001528 *(Citrullus lanatus)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Cla001528	T344525_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.961	0.649
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.954	0.568
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.954	0.622
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.953	0.604
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.953	0.622
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.952	0.568
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.952	0.568
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.952	0.568
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.952	0.568
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.952	0.595
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.952	0.595
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.952	0.595
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.952	0.595
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.949	0.586
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.947	0.568
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.945	0.514
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.945	0.559
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.942	0.514
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.942	0.504
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.942	0.523
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.942	0.523
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.941	0.550
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.940	0.514
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.940	0.514
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.939	0.504
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.939	0.504
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.939	0.504
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.939	0.504
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.939	0.504
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.938	0.532
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.938	0.532
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.925	0.450
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.924	0.459
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.877	0.477
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.877	0.477
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cla001528	TCP	61	284	TSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSATLTPKIDAVPRSNWAMMGANLNRSHMATPGFWPSLGGIGTGFVSENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQIYHQIGQNRESSAAAPLEQDQAPDKDDSQES

Links
Other TCP family TFs
Other *Citrullus lanatus* TFs

650 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00009p00253500	Amborella trichopoda	AMTR_s00009p00253500	N	0.000
Aquca_038_00045	Aquilegia coerulea	Aquca_038_00045	N	0.000
scaffold_200168.1	Arabidopsis lyrata	scaffold_200168.1	N	0.000
AT1G63490	Arabidopsis thaliana	AT1G63490	N	0.000
Bostr.9600s0015	Boechera stricta	Bostr.9600s0015	N	0.000
BRADI1G29247	Brachypodium distachyon	BRADI1G29247	N	0.000
Bo9g029100	Brassica oleracea	Bo9g029100	N	0.000
PK05702.1	Cannabis sativa	PK05702.1	N	0.000
Cagra.2104s0024	Capsella grandiflora	Cagra.2104s0024	N	0.000
Cla011637	Citrullus lanatus	Cla011637	N	0.000
Cla007529	Citrullus lanatus	Cla007529	I	0.000
orange1.1g020305m.g	Citrus sinensis	orange1.1g020305m.g	I	0.000
orange1.1g000212m.g	Citrus sinensis	orange1.1g000212m.g	N	0.000
Eucgr.D01851	Eucalyptus grandis	Eucgr.D01851	N	0.000
Thhalv10023217m.g	Eutrema salsugineum	Thhalv10023217m.g	N	0.000
gene32474-v1.0-hybrid	Fragaria vesca	gene32474-v1.0-hybrid	N	0.000
GLYMA01G42890	Glycine max	GLYMA01G42890	N	0.000
GLYMA11G02580	Glycine max	GLYMA11G02580	N	0.000
Gorai.004G211700	Gossypium raimondii	Gorai.004G211700	N	0.000
Lus10008495.g	Linum usitatissimum	Lus10008495.g	N	0.000
chr2.CM0304.950.nc	Lotus japonicus	chr2.CM0304.950.nc	N	0.000
chr1.CM0121.260.nc	Lotus japonicus	chr1.CM0121.260.nc	N	0.000
chr1.CM0121.100.nd	Lotus japonicus	chr1.CM0121.100.nd	N	0.000
MDP0000158904	Malus domestica	MDP0000158904	N	0.000
MDP0000287313	Malus domestica	MDP0000287313	N	0.000
MDP0000286412	Malus domestica	MDP0000286412	N	0.000
MDP0000162827	Malus domestica	MDP0000162827	N	0.000
cassava14944.m1	Manihot esculenta	cassava14944.m1	N	0.000
MTR_5g010300	Medicago truncatula	MTR_5g010300	N	0.000
mgf018831m	Mimulus guttatus	mgf018831m	N	0.000
PDK_20s1401711g002	Phoenix dactylifera	PDK_20s1401711g002	N	0.000
Pm023825	Prunus mume	Pm023825	N	0.000
30190.m011218	Ricinus communis	30190.m011218	N	0.000
Solyc08g081000.2	Solanum lycopersicum	Solyc08g081000.2	N	0.000
Sb10g031260	Sorghum bicolor	Sb10g031260	N	0.000
TCM_016246	Theobroma cacao	TCM_016246	N	0.000
GRMZM2G466292	Zea mays	GRMZM2G466292	N	0.000

Cla001528 (Citrullus lanatus) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

650 Related TFs

Cla001528 **(Citrullus lanatus)
TCP**