cassava32886.m1 (Manihot esculenta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 cassava32886.m1 T344611_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.847 0.382
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.827 0.357
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava32886.m1 TCP 123 279

Links

Other TCP family TFs
Other Manihot esculenta TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01923 Aegilops tauschii F775_01923 I 0.874
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.881
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.886
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.847
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.854
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.836
TCP1 Arabidopsis thaliana AT1G67260 D 0.827
BRC2 Arabidopsis thaliana AT1G68800 I 0.854
BRC1 Arabidopsis thaliana AT3G18550 I 0.850
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.851
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.855
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.850
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.840
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.862
Bo1g117490 Brassica oleracea Bo1g117490 I 0.848
Bo2g055640 Brassica oleracea Bo2g055640 I 0.837
Bo2g061250 Brassica oleracea Bo2g061250 I 0.841
Bo3g071560 Brassica oleracea Bo3g071560 I 0.850
Bo5g117410 Brassica oleracea Bo5g117410 N 0.858
Bo6g099040 Brassica oleracea Bo6g099040 I 0.838
Bo6g103670 Brassica oleracea Bo6g103670 I 0.840
Bra001710 Brassica rapa Bra001710 I 0.857
Bra004097 Brassica rapa Bra004097 I 0.822
Bra004212 Brassica rapa Bra004212 I 0.836
Bra034010 Brassica rapa Bra034010 I 0.842
Bra037579 Brassica rapa Bra037579 I 0.848
Bra038350 Brassica rapa Bra038350 I 0.841
PK16683.1 Cannabis sativa PK16683.1 N 0.831
PK19717.1 Cannabis sativa PK19717.1 D 0.847
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.856
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.855
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.865
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.865
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.855
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.852
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.887
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.879
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.828
Cla002355 Citrullus lanatus Cla002355 I 0.858
Cla007227 Citrullus lanatus Cla007227 I 0.833
Cla016709 Citrullus lanatus Cla016709 I 0.850
Cla018797 Citrullus lanatus Cla018797 N 0.835
Cla019282 Citrullus lanatus Cla019282 N 0.925
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.900
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.906
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.900
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.906
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.854
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.841
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.912
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.841
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.866
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.829
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.930
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.848
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.882
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.872
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.849
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.853
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.832
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.872
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.826
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.882
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.825
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.871
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.900
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.891
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.881
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.862
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.849
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.826
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.875
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.866
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.825
Lus10032465.g Linum usitatissimum Lus10032465.g N 0.858
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.848
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.832
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.823
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.873
MDP0000173048 Malus domestica MDP0000173048 I 0.874
MDP0000219838 Malus domestica MDP0000219838 N 0.896
MDP0000224810 Malus domestica MDP0000224810 N 0.919
MDP0000272980 Malus domestica MDP0000272980 I 0.860
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.846
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.886
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.963
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.860
mgf022233m Mimulus guttatus mgf022233m I 0.836
mgf024687m Mimulus guttatus mgf024687m I 0.870
mgf026636m Mimulus guttatus mgf026636m I 0.855
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.845
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.828
OBART08G15630 Oryza barthii OBART08G15630 N 0.843
OBART09G10040 Oryza barthii OBART09G10040 I 0.875
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.856
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.852
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.875
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.852
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.875
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.858
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.853
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.867
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.875
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.865
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.853
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.852
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.875
OS08G0432300 Oryza sativa OS08G0432300 I 0.852
OS09G0410500 Oryza sativa OS09G0410500 I 0.875
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.848
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.856
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.867
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.869
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.891
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.900
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.959
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.960
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.822
Pm015499 Prunus mume Pm015499 I 0.870
Pm029002 Prunus mume Pm029002 I 0.863
Pm030202 Prunus mume Pm030202 I 0.886
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.886
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.863
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.871
29738.m001041 Ricinus communis 29738.m001041 I 0.875
30167.m000856 Ricinus communis 30167.m000856 I 0.847
30174.m008721 Ricinus communis 30174.m008721 I 0.946
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.943
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.889
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.959
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.834
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.941
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.941
Si015230m.g Setaria italica Si015230m.g I 0.865
Si033183m.g Setaria italica Si033183m.g I 0.850
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.861
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.868
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.846
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.865
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.858
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.865
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.863
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.870
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.848
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.864
TCM_011874 Theobroma cacao TCM_011874 I 0.876
TCM_012252 Theobroma cacao TCM_012252 I 0.892
TCM_019518 Theobroma cacao TCM_019518 I 0.868
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.866
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.873
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.867
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.895
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.826
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.874
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.869
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.849
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.852
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.867