CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

BRADI1G08106 *(Brachypodium distachyon)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	BRADI1G08106	T352371_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.873	0.948
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.863	0.828
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.863	0.828
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.861	0.845
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.861	0.845
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.861	0.828
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.861	0.828
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.861	0.828
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.859	0.828
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.857	0.828
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.840	0.690
WRKY45 M00899_2.00	Arabidopsis thaliana	NNRGTCAAMGN	NCKTTGACYNN	PBM Franco-Zorrilla et al.(2014) WRKY45	0.831	0.672
WRKY45 M07397_2.00	Arabidopsis thaliana	NAAAAGTCAAMD	HKTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY45_col_a	0.831	0.672
WRKY45 M07398_2.00	Arabidopsis thaliana	MAAAGTCAAMV	BKTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY45_colamp_a	0.831	0.672
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.825	0.552
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.825	0.552
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.825	0.552
WRKY75 M02562_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Weirauch et al.(2014) pTH8821	0.825	0.690
WRKY75 M07420_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY75_col_a	0.825	0.690
WRKY75 M07421_2.00	Arabidopsis thaliana	VAAAGTCAACRNH	DNYGTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY75_colamp_a	0.825	0.690
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.825	0.534
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.825	0.534
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.825	0.534
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.822	0.552
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.822	0.552
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.822	0.552
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.821	0.552
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.821	0.552
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.821	0.552
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.821	0.517
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.821	0.517
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.821	0.517
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.820	0.517
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.820	0.517
WRKY12 M00898_2.00	Arabidopsis thaliana	NHGGTCAACNN	NNGTTGACCDN	PBM Franco-Zorrilla et al.(2014) WRKY12	0.820	0.707
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.817	0.534
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.816	0.552
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.816	0.552
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.816	0.552
WRKY43 M02555_2.00	Arabidopsis thaliana	NRGTCAAHNN	NNDTTGACYN	PBM Weirauch et al.(2014) pTH7373	0.816	0.672
WRKY43 M07393_2.00	Arabidopsis thaliana	NNAAAGTCAACGNN	NNCGTTGACTTTNN	Dap-seq OMalley et al.(2016) WRKY43_col_a	0.816	0.672
WRKY43 M07394_2.00	Arabidopsis thaliana	NNNNAAAGTCAACGN	NCGTTGACTTTNNNN	Dap-seq OMalley et al.(2016) WRKY43_colamp_a	0.816	0.672
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.815	0.500
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.815	0.500
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.815	0.500
WRKY50 M07424_2.00	Arabidopsis thaliana	NNAAAAGTCAAMN	NKTTGACTTTTNN	Dap-seq OMalley et al.(2016) WRKY50_col_a	0.815	0.672
WRKY50 M07425_2.00	Arabidopsis thaliana	NWAAGTCAANN	NNTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY50_colamp_a	0.815	0.672
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.815	0.517
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.815	0.517
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.815	0.517
PK25870.1 M01325_2.00	Cannabis sativa	NRGTCAAM	KTTGACYN	PBM Lambert et al.(2019) pTH10156	0.814	0.621
WRKY24 M07426_2.00	Arabidopsis thaliana	NNNAWAGTCAACGN	NCGTTGACTWTNNN	Dap-seq OMalley et al.(2016) WRKY24_col_a	0.811	0.655
WRKY24 M07427_2.00	Arabidopsis thaliana	NAWAGTCAACGNH	DNCGTTGACTWTN	Dap-seq OMalley et al.(2016) WRKY24_colamp_a	0.811	0.655
WRKY7 M07412_2.00	Arabidopsis thaliana	NNDDDNNNNMAAAGTCAACGV	BCGTTGACTTTKNNNNHHHNN	Dap-seq OMalley et al.(2016) WRKY7_colamp_a	0.809	0.517
WRKY7 M07413_2.00	Arabidopsis thaliana	NAAAAGTCAACKNN	NNMGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY7_col	0.809	0.517
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BRADI1G08106.1	WRKY	130	187	EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH
BRADI1G08106.2	WRKY	130	187	EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH

Links
Other WRKY family TFs
Other *Brachypodium distachyon* TFs

2139 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
GLRG_05364	Colletotrichum graminicola	GLRG_05364	N
CSUB01_06102	Colletotrichum sublineola	CSUB01_06102	N
fgenesh1_pg.C_scaffold_9000410	Cryphonectria parasitica	fgenesh1_pg.C_scaffold_9000410	N
HMPREF1120_04133	Exophiala dermatitidis	HMPREF1120_04133	N
PV06_08153	Exophiala oligosperma	PV06_08153	N
PV05_11779	Exophiala xenobiotica	PV05_11779	N
NechaG102087	Fusarium solani	NechaG102087	N
NechaG56106	Fusarium solani	NechaG56106	N
LEMA_P104170.1	Leptosphaeria maculans	LEMA_P104170.1	N
MPH_11049	Macrophomina phaseolina	MPH_11049	N
e_gw1.100.23.1	Nectria haematococca	e_gw1.100.23.1	N
estExt_fgenesh1_pg.C_sca_41_chr12_2_00090	Nectria haematococca	estExt_fgenesh1_pg.C_sca_41_chr12_2_00090	N
PEX1_051210	Penicillium expansum	PEX1_051210	N
PEX1_085400	Penicillium expansum	PEX1_085400	N
U727_00433130301	Penicillium solitum	U727_00433130301	N
SBOR_5781	Sclerotinia borealis	SBOR_5781	N
sr16602	Sporisorium reilianum	sr16602	N
HMPREF1624_08182	Sporothrix schenckii	HMPREF1624_08182	N
VDBG_01807	Verticillium albo atrum	VDBG_01807	N

BRADI1G08106 (Brachypodium distachyon) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

2139 Related TFs

BRADI1G08106 **(Brachypodium distachyon)
WRKY**