Carubv10017349m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10017349m.g T355968_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY70
M07399_2.00 		Arabidopsis thaliana
HAAAGTCAACGNN
NNCGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY70_col 		0.872 0.898
WRKY53
M01090_2.00 		Arabidopsis thaliana
RGTCAACNN
NNGTTGACY		 PBM
Sullivan et al.(2014)
pTH8245 		0.832 0.661
WRKY46
M07395_2.00 		Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB		 Dap-seq
OMalley et al.(2016)
WRKY46_col_a 		0.820 0.593
WRKY46
M07396_2.00 		Arabidopsis thaliana
HRAAGTCAACG
CGTTGACTTYD		 Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a 		0.820 0.593
WRKY55
M07392_2.00 		Arabidopsis thaliana
HWAGTCAACGNH
DNCGTTGACTWD		 Dap-seq
OMalley et al.(2016)
WRKY55_col_a 		0.819 0.576
WRKY30
M02563_2.00 		Arabidopsis thaliana
RGTCAACNNN
NNNGTTGACY		 PBM
Weirauch et al.(2014)
pTH7611 		0.814 0.593
WRKY30
M07422_2.00 		Arabidopsis thaliana
DAAGTCAACGN
NCGTTGACTTH		 Dap-seq
OMalley et al.(2016)
WRKY30_col_a 		0.814 0.593
WRKY30
M07423_2.00 		Arabidopsis thaliana
NNAAGTCAACGNH
DNCGTTGACTTNN		 Dap-seq
OMalley et al.(2016)
WRKY30_colamp_a 		0.814 0.593
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017349m WRKY 247 307

Links

Other WRKY family TFs
Other Capsella rubella TFs

492 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.000
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.000
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.000
PK15652.1 Cannabis sativa PK15652.1 I 0.000
Ca_24123 Cicer arietinum Ca_24123 I 0.000
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.000
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.000
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.000
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.000
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.000
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.000
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.000
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.000
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.000
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.000
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.000
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.000
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.000
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.000
MDP0000128924 Malus domestica MDP0000128924 I 0.000
MDP0000939633 Malus domestica MDP0000939633 I 0.000
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.000
OBART01G02610 Oryza barthii OBART01G02610 I 0.000
OBART01G27360 Oryza barthii OBART01G27360 I 0.000
OB01G12600 Oryza brachyantha OB01G12600 I 0.000
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.000
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.000
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.000
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.000
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.000
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.000
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.000
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.000
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.000
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.000
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.000
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.000
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.000
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.000
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.000
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.000
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.000
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.000
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.000
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.000
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.000
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.000
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.000
OS01G0140700 Oryza sativa OS01G0140700 I 0.000
OS01G0141000 Oryza sativa OS01G0141000 I 0.000
OS01G0693400 Oryza sativa OS01G0693400 I 0.000
OS05G0549800 Oryza sativa OS05G0549800 I 0.000
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.000
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.000
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.000
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.000
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.000
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.000
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.000
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.000
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.000
Pm029015 Prunus mume Pm029015 I 0.000
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.000
Si001909m.g Setaria italica Si001909m.g I 0.000
Si004045m.g Setaria italica Si004045m.g I 0.000
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.000
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.000
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.000
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.000
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.000
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.000
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.000
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.000
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.000
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.000
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.000
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.000
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.000
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.000