Pavir.J12092 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.J12092 T356827_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.809 0.467
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J12092.1.p WRKY 115 184
Pavir.J12092.2.p WRKY 115 180
Pavir.J12092.3.p WRKY 114 183

Links

Other WRKY family TFs
Other Panicum virgatum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_23346 Aegilops tauschii F775_23346 N 0.833
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.809
WRKY62 Arabidopsis thaliana AT5G01900 D 0.809
BRADI4G44342 Brachypodium distachyon BRADI4G44342 N 0.827
Cla011097 Citrullus lanatus Cla011097 I 0.808
Cucsa.107310 Cucumis sativus Cucsa.107310 I 0.809
GLYMA05G36970 Glycine max GLYMA05G36970 I 0.811
GLYMA08G02580 Glycine max GLYMA08G02580 I 0.814
GLYMA06G13090 Glycine max GLYMA06G13090 I 0.809
GLYMA04G41701 Glycine max GLYMA04G41701 I 0.809
Gorai.004G134600 Gossypium raimondii Gorai.004G134600 I 0.810
MLOC_68369 Hordeum vulgare MLOC_68369 N 0.838
LPERR12G01100 Leersia perrieri LPERR12G01100 I 0.850
LPERR01G30500 Leersia perrieri LPERR01G30500 I 0.809
LPERR07G11260 Leersia perrieri LPERR07G11260 I 0.822
Lus10001902.g Linum usitatissimum Lus10001902.g I 0.811
chr4.CM0025.230.nd Lotus japonicus chr4.CM0025.230.nd I 0.808
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.813
OBART12G00860 Oryza barthii OBART12G00860 I 0.852
OBART11G01120 Oryza barthii OBART11G01120 I 0.852
OBART05G20330 Oryza barthii OBART05G20330 I 0.808
OB01G44170 Oryza brachyantha OB01G44170 I 0.814
OB11G27340 Oryza brachyantha OB11G27340 I 0.815
OB12G11040 Oryza brachyantha OB12G11040 I 0.850
ORGLA12G0007700 Oryza glaberrima ORGLA12G0007700 I 0.852
ORGLA11G0202100 Oryza glaberrima ORGLA11G0202100 I 0.852
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.808
ORGLA01G0292000 Oryza glaberrima ORGLA01G0292000 N 0.811
OGLUM11G00880 Oryza glumaepatula OGLUM11G00880 I 0.852
OGLUM01G39380 Oryza glumaepatula OGLUM01G39380 N 0.811
BGIOSGA036755 Oryza indica BGIOSGA036755 I 0.852
BGIOSGA034611 Oryza indica BGIOSGA034611 I 0.852
BGIOSGA000583 Oryza indica BGIOSGA000583 N 0.811
OMERI11G01540 Oryza meridionalis OMERI11G01540 I 0.849
OMERI11G01580 Oryza meridionalis OMERI11G01580 I 0.849
OMERI01G32500 Oryza meridionalis OMERI01G32500 N 0.809
ONIVA01G40380 Oryza nivara ONIVA01G40380 N 0.811
ONIVA11G01190 Oryza nivara ONIVA11G01190 I 0.852
OPUNC01G34290 Oryza punctata OPUNC01G34290 N 0.811
OPUNC11G00990 Oryza punctata OPUNC11G00990 N 0.843
OPUNC12G01000 Oryza punctata OPUNC12G01000 N 0.843
ORUFI01G38680 Oryza rufipogon ORUFI01G38680 N 0.811
Pavir.J20374 Panicum virgatum Pavir.J20374 N 0.880
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.817
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.817
Pavir.Db02095 Panicum virgatum Pavir.Db02095 I 0.809
Pavir.Da02163 Panicum virgatum Pavir.Da02163 I 0.808
Pavir.Ca00085 Panicum virgatum Pavir.Ca00085 N 0.871
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.813
Pm018401 Prunus mume Pm018401 I 0.808
PRUPE_ppa007708mg Prunus persica PRUPE_ppa007708mg I 0.808
Si028202m.g Setaria italica Si028202m.g I 0.813
Si010813m.g Setaria italica Si010813m.g N 0.872
Solyc08g082110.2 Solanum lycopersicum Solyc08g082110.2 I 0.810
PGSC0003DMG400012160 Solanum tuberosum PGSC0003DMG400012160 I 0.812
Sb08g002520 Sorghum bicolor Sb08g002520 I 0.865
TCM_016426 Theobroma cacao TCM_016426 I 0.809
Traes_5DL_09F1F8F79 Triticum aestivum Traes_5DL_09F1F8F79 N 0.833
Traes_5BL_175E7FC38 Triticum aestivum Traes_5BL_175E7FC38 N 0.833
TRIUR3_24639 Triticum urartu TRIUR3_24639 N 0.833
VIT_02s0025g01280 Vitis vinifera VIT_02s0025g01280 I 0.814
GRMZM2G139815 Zea mays GRMZM2G139815 I 0.810
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.818
GRMZM2G005207 Zea mays GRMZM2G005207 I 0.870