TEM1 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT1G25560 T000416_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TEM1
M01605_2.00
Arabidopsis thaliana
RCAACATW

WATGTTGY
PBM
Weirauch et al.(2014)
pTH8264
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M01645_2.00
Arabidopsis thaliana
NNNNVDCABN

NVTGHBNNNN
PBM
Weirauch et al.(2014)
pTH8249
0.879 0.878
RAV2
M01609_2.00
Arabidopsis thaliana
RCAACATH

DATGTTGY
PBM
Weirauch et al.(2014)
pTH8279
0.875 0.939
ARF14
M01647_2.00
Arabidopsis thaliana
NNVACAKN

NMTGTBNN
PBM
Weirauch et al.(2014)
pTH8296
0.865 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01605_2.00 AP2 51 100

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G25560.1 AP2 70 119

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAV2 Arabidopsis thaliana AT1G68840 D 0.875
OLONG_017837 Oryza longistaminata OLONG_017837 I 0.728
Si039493m.g Setaria italica Si039493m.g I 0.715
Traes_4BL_5B2AF2556 Triticum aestivum Traes_4BL_5B2AF2556 I 0.697
Traes_4DL_FE7B7E018 Triticum aestivum Traes_4DL_FE7B7E018 I 0.697
Pavir.J21533 Panicum virgatum Pavir.J21533 I 0.695