CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ABI4
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT2G40220
T000458_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
abi4
M02648_2.00
Zea mays
CGSYGCYBYB
VRVRGCRSCG
SELEX
Mathelier et al.(2014)
MA0123.1
0.782
0.920
abi4
M09706_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABI4_01
0.782
0.920
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G40220.1
AP2
53
104
FRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGS
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29814.m000739
Ricinus communis
29814.m000739
I
0.802
abi4
Zea mays
GRMZM2G093595
D
0.782
ABI4
Oryza sativa
OS05G0351200
I
0.782
ABI4
Vitis vinifera
VIT_13s0067g01400
I
0.793
ABI4
Arabidopsis lyrata
Al_scaffold_0004_2621
I
0.825
AMTR_s00007p00053050
Amborella trichopoda
AMTR_s00007p00053050
I
0.732
BGIOSGA018232
Oryza indica
BGIOSGA018232
I
0.782
Bo3g034810
Brassica oleracea
Bo3g034810
I
0.815
Bo4g025410
Brassica oleracea
Bo4g025410
I
0.815
Bostr.23794s0036
Boechera stricta
Bostr.23794s0036
I
0.825
Bra000178
Brassica rapa
Bra000178
I
0.815
Bra004978
Brassica rapa
Bra004978
I
0.815
Cagra.7053s0005
Capsella grandiflora
Cagra.7053s0005
I
0.825
Carubv10025253m.g
Capsella rubella
Carubv10025253m.g
I
0.825
cassava20838.m1
Manihot esculenta
cassava20838.m1
I
0.792
cassava41265.m1
Manihot esculenta
cassava41265.m1
I
0.802
Ca_12465
Cicer arietinum
Ca_12465
I
0.786
chr2.CM0002.60.nc
Lotus japonicus
chr2.CM0002.60.nc
I
0.792
Ciclev10033578m.g
Citrus clementina
Ciclev10033578m.g
I
0.802
Cla006708
Citrullus lanatus
Cla006708
I
0.792
evm.TU.supercontig_1288.2
Carica papaya
evm.TU.supercontig_1288.2
I
0.741
gene21003-v1.0-hybrid
Fragaria vesca
gene21003-v1.0-hybrid
I
0.802
GLYMA02G43240
Glycine max
GLYMA02G43240
I
0.802
GLYMA14G06290
Glycine max
GLYMA14G06290
I
0.802
Gorai.011G291900
Gossypium raimondii
Gorai.011G291900
I
0.743
GSMUA_Achr3G10100_001
Musa acuminata
GSMUA_Achr3G10100_001
I
0.777
GSMUA_Achr5G07400_001
Musa acuminata
GSMUA_Achr5G07400_001
I
0.777
GSMUA_Achr9G18060_001
Musa acuminata
GSMUA_Achr9G18060_001
I
0.777
LPERR05G10140
Leersia perrieri
LPERR05G10140
I
0.782
Lus10009834.g
Linum usitatissimum
Lus10009834.g
I
0.786
Lus10040944.g
Linum usitatissimum
Lus10040944.g
I
0.786
MDP0000225376
Malus domestica
MDP0000225376
I
0.802
MDP0000628484
Malus domestica
MDP0000628484
I
0.792
mgf024416m
Mimulus guttatus
mgf024416m
I
0.799
MTR_5g082950
Medicago truncatula
MTR_5g082950
I
0.789
OGLUM05G13600
Oryza glumaepatula
OGLUM05G13600
I
0.782
OMERI05G11540
Oryza meridionalis
OMERI05G11540
I
0.782
ONIVA05G13490
Oryza nivara
ONIVA05G13490
I
0.782
OPUNC05G11000
Oryza punctata
OPUNC05G11000
I
0.782
orange1.1g038194m.g
Citrus sinensis
orange1.1g038194m.g
I
0.802
ORGLA05G0109500
Oryza glaberrima
ORGLA05G0109500
I
0.782
Pavir.J29572
Panicum virgatum
Pavir.J29572
I
0.782
Pavir.J33237
Panicum virgatum
Pavir.J33237
I
0.782
Pavir.J38620
Panicum virgatum
Pavir.J38620
I
0.782
PGSC0003DMG400034739
Solanum tuberosum
PGSC0003DMG400034739
I
0.802
PGSC0003DMG400041883
Solanum tuberosum
PGSC0003DMG400041883
I
0.802
Pm018953
Prunus mume
Pm018953
I
0.802
POPTR_0008s07120
Populus trichocarpa
POPTR_0008s07120
I
0.802
POPTR_0010s19370
Populus trichocarpa
POPTR_0010s19370
I
0.789
PRUPE_ppa015230mg
Prunus persica
PRUPE_ppa015230mg
I
0.802
SapurV1A.0061s0480
Salix purpurea
SapurV1A.0061s0480
I
0.802
SapurV1A.0650s0090
Salix purpurea
SapurV1A.0650s0090
I
0.784
Sb09g016550
Sorghum bicolor
Sb09g016550
I
0.782
SELMODRAFT_420500
Selaginella moellendorffii
SELMODRAFT_420500
I
0.727
SELMODRAFT_427925
Selaginella moellendorffii
SELMODRAFT_427925
I
0.727
TCM_042471
Theobroma cacao
TCM_042471
I
0.802
Thhalv10017614m.g
Eutrema salsugineum
Thhalv10017614m.g
I
0.815