SMZ (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT3G54990 T000479_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC

GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN

NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.855 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G54990.1 AP2 121 171
AT3G54990.2 AP2 121 171

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.869
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.869
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.869
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.869
Bra007123 Brassica rapa Bra007123 I 0.869
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.869
Bo8g087280 Brassica oleracea Bo8g087280 I 0.869
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.864
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.858
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.858
TOE2 Arabidopsis thaliana AT5G60120 D 0.855
Bra002510 Brassica rapa Bra002510 I 0.855
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.855
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.855
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.855
Bra020262 Brassica rapa Bra020262 I 0.855
Bo9g141100 Brassica oleracea Bo9g141100 I 0.855
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.855
PK16652.1 Cannabis sativa PK16652.1 I 0.854
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.854
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.854
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.854
Cla020387 Citrullus lanatus Cla020387 I 0.854
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.854
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.854
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.853
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.848
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.848
Bo6g068410 Brassica oleracea Bo6g068410 I 0.846
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.836
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.821
Pm018608 Prunus mume Pm018608 I 0.821
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.817
MDP0000285955 Malus domestica MDP0000285955 I 0.812
MDP0000281079 Malus domestica MDP0000281079 I 0.812
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.808
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.808
Ca_26761 Cicer arietinum Ca_26761 I 0.804
SNZ Arabidopsis thaliana AT2G39250 I 0.801
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.801
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.801
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I 0.688