CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo4g195220
(
Brassica oleracea
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bo4g195220
T000825_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.833
0.979
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.833
0.979
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.833
0.979
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.723
0.792
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.723
0.792
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC
GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.718
0.771
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.706
0.771
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.706
0.771
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.706
0.771
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.698
0.667
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.685
0.688
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.685
0.688
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo4g195220.1
AP2
104
155
QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLKGS
Links
Other
AP2
family TFs
Other
Brassica oleracea
TFs
446 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28718.m000038
Ricinus communis
28718.m000038
I
30170.m013843
Ricinus communis
30170.m013843
I
AMTR_s00051p00204250
Amborella trichopoda
AMTR_s00051p00204250
I
Aquca_007_00717
Aquilegia coerulea
Aquca_007_00717
I
Aquca_010_00625
Aquilegia coerulea
Aquca_010_00625
I
RAP2-1
Arabidopsis thaliana
AT1G46768
D
ERF008
Arabidopsis thaliana
AT2G23340
D
ERF011
Arabidopsis thaliana
AT3G50260
D
RAP2-9
Arabidopsis thaliana
AT4G06746
D
RAP2-10
Arabidopsis thaliana
AT4G36900
D
ERF010
Arabidopsis thaliana
AT5G67190
D
BGIOSGA014220
Oryza indica
BGIOSGA014220
I
BGIOSGA014221
Oryza indica
BGIOSGA014221
I
BGIOSGA022380
Oryza indica
BGIOSGA022380
I
Bo1g004940
Brassica oleracea
Bo1g004940
I
Bo4g151460
Brassica oleracea
Bo4g151460
I
Bo7g063980
Brassica oleracea
Bo7g063980
I
Bo7g118430
Brassica oleracea
Bo7g118430
I
Bo8g079660
Brassica oleracea
Bo8g079660
I
Bo9g020380
Brassica oleracea
Bo9g020380
I
Bostr.0568s0141
Boechera stricta
Bostr.0568s0141
I
Bostr.12302s0138
Boechera stricta
Bostr.12302s0138
I
Bostr.27895s0153
Boechera stricta
Bostr.27895s0153
I
Bostr.3877s0058
Boechera stricta
Bostr.3877s0058
I
Bostr.6864s0220
Boechera stricta
Bostr.6864s0220
I
Bostr.7867s1581
Boechera stricta
Bostr.7867s1581
I
Bra011744
Brassica rapa
Bra011744
I
Bra012140
Brassica rapa
Bra012140
I
Bra014056
Brassica rapa
Bra014056
I
Bra017811
Brassica rapa
Bra017811
I
Bra032173
Brassica rapa
Bra032173
I
Bra036061
Brassica rapa
Bra036061
I
Bra037124
Brassica rapa
Bra037124
I
BRADI1G48320
Brachypodium distachyon
BRADI1G48320
I
BRADI5G24110
Brachypodium distachyon
BRADI5G24110
I
Cagra.0342s0005
Capsella grandiflora
Cagra.0342s0005
I
Cagra.0706s0004
Capsella grandiflora
Cagra.0706s0004
I
Cagra.1735s0005
Capsella grandiflora
Cagra.1735s0005
I
Cagra.29993s0001
Capsella grandiflora
Cagra.29993s0001
I
Cagra.4909s0050
Capsella grandiflora
Cagra.4909s0050
I
Carubv10005767m.g
Capsella rubella
Carubv10005767m.g
I
Carubv10010891m.g
Capsella rubella
Carubv10010891m.g
I
Carubv10018162m.g
Capsella rubella
Carubv10018162m.g
I
Carubv10024198m.g
Capsella rubella
Carubv10024198m.g
I
Carubv10027999m.g
Capsella rubella
Carubv10027999m.g
I
cassava17493.valid.m1
Manihot esculenta
cassava17493.valid.m1
I
cassava47353.m1
Manihot esculenta
cassava47353.m1
I
cassava9153.m1
Manihot esculenta
cassava9153.m1
I
Ca_01556
Cicer arietinum
Ca_01556
I
Ca_02170
Cicer arietinum
Ca_02170
I
Ciclev10002733m.g
Citrus clementina
Ciclev10002733m.g
I
Ciclev10026687m.g
Citrus clementina
Ciclev10026687m.g
I
Cla014175
Citrullus lanatus
Cla014175
I
Cla020550
Citrullus lanatus
Cla020550
I
Cla020961
Citrullus lanatus
Cla020961
I
Cla022937
Citrullus lanatus
Cla022937
I
Cucsa.102560
Cucumis sativus
Cucsa.102560
I
Cucsa.352470
Cucumis sativus
Cucsa.352470
I
Cucsa.367300
Cucumis sativus
Cucsa.367300
I
Cucsa.395960
Cucumis sativus
Cucsa.395960
I
Eucgr.F00192
Eucalyptus grandis
Eucgr.F00192
I
Eucgr.F02317
Eucalyptus grandis
Eucgr.F02317
I
Eucgr.F02319
Eucalyptus grandis
Eucgr.F02319
I
Eucgr.H02094
Eucalyptus grandis
Eucgr.H02094
I
DEAR3
Arabidopsis lyrata
fgenesh2_kg.4__264__AT2G23340.1
I
CEJ1
Arabidopsis lyrata
fgenesh2_kg.5__1372__AT3G50260.1
I
RAP2.9
Arabidopsis lyrata
fgenesh2_kg.6__2823__AT4G06746.1
I
gene09137-v1.0-hybrid
Fragaria vesca
gene09137-v1.0-hybrid
I
gene23873-v1.0-hybrid
Fragaria vesca
gene23873-v1.0-hybrid
I
GLYMA01G39540
Glycine max
GLYMA01G39540
I
GLYMA04G04355
Glycine max
GLYMA04G04355
I
GLYMA05G19050
Glycine max
GLYMA05G19050
I
GLYMA06G04490
Glycine max
GLYMA06G04490
I
GLYMA11G05700
Glycine max
GLYMA11G05700
I
GLYMA14G09320
Glycine max
GLYMA14G09320
I
GLYMA17G18580
Glycine max
GLYMA17G18580
I
GLYMA17G35860
Glycine max
GLYMA17G35860
I
Gorai.003G026100
Gossypium raimondii
Gorai.003G026100
I
Gorai.003G099700
Gossypium raimondii
Gorai.003G099700
I
Gorai.008G077900
Gossypium raimondii
Gorai.008G077900
I
Gorai.009G214300
Gossypium raimondii
Gorai.009G214300
I
Gorai.010G021900
Gossypium raimondii
Gorai.010G021900
I
GRMZM2G119865
Zea mays
GRMZM2G119865
I
GRMZM2G174917
Zea mays
GRMZM2G174917
I
GRMZM2G301860
Zea mays
GRMZM2G301860
I
GRMZM2G421033
Zea mays
GRMZM2G421033
I
GSMUA_Achr3G13190_001
Musa acuminata
GSMUA_Achr3G13190_001
I
GSMUA_Achr4G20280_001
Musa acuminata
GSMUA_Achr4G20280_001
I
GSMUA_Achr5G22190_001
Musa acuminata
GSMUA_Achr5G22190_001
I
GSMUA_Achr7G05410_001
Musa acuminata
GSMUA_Achr7G05410_001
I
GSMUA_Achr7G20800_001
Musa acuminata
GSMUA_Achr7G20800_001
I
GSMUA_Achr8G15640_001
Musa acuminata
GSMUA_Achr8G15640_001
I
GSMUA_Achr9G11310_001
Musa acuminata
GSMUA_Achr9G11310_001
I
GSMUA_AchrUn_randomG12040_001
Musa acuminata
GSMUA_AchrUn_randomG12040_001
I
GSMUA_AchrUn_randomG26940_001
Musa acuminata
GSMUA_AchrUn_randomG26940_001
I
LjSGA_004289.2
Lotus japonicus
LjSGA_004289.2
I
LjSGA_007705.1
Lotus japonicus
LjSGA_007705.1
I
LjSGA_134387.1
Lotus japonicus
LjSGA_134387.1
I
LPERR04G23120
Leersia perrieri
LPERR04G23120
I
LPERR06G04000
Leersia perrieri
LPERR06G04000
I
Lus10009373.g
Linum usitatissimum
Lus10009373.g
I
Lus10010043.g
Linum usitatissimum
Lus10010043.g
I
Lus10018727.g
Linum usitatissimum
Lus10018727.g
I
MDP0000125673
Malus domestica
MDP0000125673
I
MDP0000179962
Malus domestica
MDP0000179962
I
MDP0000756341
Malus domestica
MDP0000756341
I
mgf000289m
Mimulus guttatus
mgf000289m
I
mgf006561m
Mimulus guttatus
mgf006561m
I
mgf021115m
Mimulus guttatus
mgf021115m
I
MLOC_81350
Hordeum vulgare
MLOC_81350
I
MTR_1g019110
Medicago truncatula
MTR_1g019110
I
MTR_3g102100
Medicago truncatula
MTR_3g102100
I
MTR_5g016750
Medicago truncatula
MTR_5g016750
I
OBART06G04460
Oryza barthii
OBART06G04460
I
OGLUM04G27370
Oryza glumaepatula
OGLUM04G27370
I
OGLUM06G04560
Oryza glumaepatula
OGLUM06G04560
I
OMERI04G22870
Oryza meridionalis
OMERI04G22870
I
ONIVA04G25910
Oryza nivara
ONIVA04G25910
I
ONIVA06G05630
Oryza nivara
ONIVA06G05630
I
OPUNC06G04240
Oryza punctata
OPUNC06G04240
I
orange1.1g031669m.g
Citrus sinensis
orange1.1g031669m.g
I
orange1.1g041516m.g
Citrus sinensis
orange1.1g041516m.g
I
ORGLA04G0237600
Oryza glaberrima
ORGLA04G0237600
I
ORGLA06G0041000
Oryza glaberrima
ORGLA06G0041000
I
ORUFI06G04420
Oryza rufipogon
ORUFI06G04420
I
OS04G0648900
Oryza sativa
OS04G0648900
I
OS06G0166400
Oryza sativa
OS06G0166400
I
Pavir.J04844
Panicum virgatum
Pavir.J04844
I
Pavir.J20437
Panicum virgatum
Pavir.J20437
I
Pavir.J27349
Panicum virgatum
Pavir.J27349
I
Pavir.J34361
Panicum virgatum
Pavir.J34361
I
PGSC0003DMG400004005
Solanum tuberosum
PGSC0003DMG400004005
I
PGSC0003DMG400007951
Solanum tuberosum
PGSC0003DMG400007951
I
PGSC0003DMG400034101
Solanum tuberosum
PGSC0003DMG400034101
I
PK15612.1
Cannabis sativa
PK15612.1
I
POPTR_0002s12550
Populus trichocarpa
POPTR_0002s12550
I
POPTR_0005s18430
Populus trichocarpa
POPTR_0005s18430
I
POPTR_0007s10750
Populus trichocarpa
POPTR_0007s10750
I
POPTR_0014s02530
Populus trichocarpa
POPTR_0014s02530
I
PRUPE_ppa012302mg
Prunus persica
PRUPE_ppa012302mg
I
PRUPE_ppa012516mg
Prunus persica
PRUPE_ppa012516mg
I
SapurV1A.0167s0190
Salix purpurea
SapurV1A.0167s0190
I
SapurV1A.0423s0180
Salix purpurea
SapurV1A.0423s0180
I
SapurV1A.0689s0100
Salix purpurea
SapurV1A.0689s0100
I
SapurV1A.1340s0030
Salix purpurea
SapurV1A.1340s0030
I
SapurV1A.1616s0040
Salix purpurea
SapurV1A.1616s0040
I
SapurV1A.2355s0030
Salix purpurea
SapurV1A.2355s0030
I
Sb06g030660
Sorghum bicolor
Sb06g030660
I
Sb10g004580
Sorghum bicolor
Sb10g004580
I
RAP2.1
Arabidopsis lyrata
scaffold_104275.1
I
RAP2.10
Arabidopsis lyrata
scaffold_700370.1
I
DEAR2
Arabidopsis lyrata
scaffold_803390.1
I
Solyc04g078640.1
Solanum lycopersicum
Solyc04g078640.1
I
TCM_000669
Theobroma cacao
TCM_000669
I
TCM_033791
Theobroma cacao
TCM_033791
I
Thhalv10000354m.g
Eutrema salsugineum
Thhalv10000354m.g
I
Thhalv10004985m.g
Eutrema salsugineum
Thhalv10004985m.g
I
Thhalv10026288m.g
Eutrema salsugineum
Thhalv10026288m.g
I
Thhalv10029052m.g
Eutrema salsugineum
Thhalv10029052m.g
I
Traes_2BL_1E57B73B21
Triticum aestivum
Traes_2BL_1E57B73B21
I
VIT_07s0031g00190
Vitis vinifera
VIT_07s0031g00190
I
VIT_18s0001g10150
Vitis vinifera
VIT_18s0001g10150
I