Bra012938 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra012938 T001078_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.860 0.941
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.860 0.941
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.823 0.824
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.823 0.824
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.823 0.824
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.803 0.784
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.803 0.784
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.803 0.784
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.794 0.843
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.788 0.745
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.781 0.745
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.752 0.725
Q2TN80_WHEAT
M09715_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_02 		0.715 0.647
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.712 0.686
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.711 0.686
ERF6
M01621_2.00 		Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN		 PBM
Weirauch et al.(2014)
pTH7228 		0.709 0.686
ERF6
M06637_2.00 		Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF6_col 		0.709 0.686
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.703 0.706
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.703 0.706
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.703 0.706
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.698 0.686
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.698 0.686
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.697 0.686
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.697 0.686
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.697 0.686
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.697 0.686
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.697 0.686
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.694 0.686
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.693 0.667
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.693 0.667
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.690 0.686
ERF15
M00718_2.00 		Arabidopsis thaliana
NGSCGSCB
VGSCGSCN		 PBM
Chang et al.(2013)
pTH7336 		0.689 0.686
ERF15
M06604_2.00 		Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF15_colamp_a 		0.689 0.686
ERF15
M06605_2.00 		Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN		 Dap-seq
OMalley et al.(2016)
ERF15_col 		0.689 0.686
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.689 0.647
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.687 0.608
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.683 0.627
RAP2-3
M01050_2.00 		Arabidopsis thaliana
CGCCGCCR
YGGCGGCG		 PBM
Sullivan et al.(2014)
pTH8811 		0.681 0.647
RAP2-3
M00847_2.00 		Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.3 		0.681 0.647
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.681 0.686
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.677 0.667
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.677 0.667
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012938.1-P AP2 98 150

Links

Other AP2 family TFs
Other Brassica rapa TFs

1139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008417 Aedes aegypti AAEL008417 N
AALB007196 Anopheles albimanus AALB007196 N
AARA009694 Anopheles arabiensis AARA009694 N
AATE006267 Anopheles atroparvus AATE006267 N
ACAC_0000409101 Angiostrongylus cantonensis ACAC_0000409101 N
ACEP12759 Atta cephalotes ACEP12759 I
ACHR002403 Anopheles christyi ACHR002403 N
ACOC_0001323101 Angiostrongylus costaricensis ACOC_0001323101 N
ACOM033320 Anopheles coluzzii ACOM033320 N
ACUA003510 Anopheles culicifacies ACUA003510 N
ACYPI003297 Acyrthosiphon pisum ACYPI003297 I
ADAC009894 Anopheles darlingi ADAC009894 N
ADIR002941 Anopheles dirus ADIR002941 N
AEPI008570 Anopheles epiroticus AEPI008570 N
AFAF018499 Anopheles farauti AFAF018499 N
AFUN011346 Anopheles funestus AFUN011346 N
AGAP004110 Anopheles gambiae AGAP004110 N
ALUE_0001851001 Ascaris lumbricoides ALUE_0001851001 N
AMAM021723 Anopheles maculatus AMAM021723 N
AMEC005071 Anopheles melas AMEC005071 N
AMEM002948 Anopheles merus AMEM002948 N
AMIN003838 Anopheles minimus AMIN003838 N
ANCCAN_29654 Ancylostoma caninum ANCCAN_29654 N
ANCCEY_08672 Ancylostoma ceylanicum ANCCEY_08672 N
AQUA009805 Anopheles quadriannulatus AQUA009805 N
ASIS023527 Anopheles sinensis ASIS023527 N
ASTEI04275 Anopheles stephensi ASTEI04275 N
ASU_10445 Ascaris suum ASU_10445 N
A_06553 Schistosoma haematobium A_06553 N
BGIBMGA013514 Bombyx mori BGIBMGA013514 N
CapteG224864 Capitella teleta CapteG224864 I
CBN09380 Caenorhabditis brenneri CBN09380 N
Cflo_06133--XP_394373.1_APIME Camponotus floridanus Cflo_06133--XP_394373.1_APIME I
CGI_10019404 Crassostrea gigas CGI_10019404 N
CJA05209 Caenorhabditis japonica CJA05209 N
CLEC002888 Cimex lectularius CLEC002888 N
CMU_009510 Cryptosporidium muris CMU_009510 N
CPIJ005084 Culex quinquefasciatus CPIJ005084 N
CpipJ_CPIJ005084 Culex pipiens CpipJ_CPIJ005084 N
CRE03905 Caenorhabditis remanei CRE03905 N
DAPPUDRAFT_303074 Daphnia pulex DAPPUDRAFT_303074 N
DICVIV_03175 Dictyocaulus viviparus DICVIV_03175 N
DILT_0001250601 Diphyllobothrium latum DILT_0001250601 N
ENSCING00000023833 Ciona intestinalis ENSCING00000023833 N
ccdc124 Oryzias latipes ENSORLG00000015728 N
estExt_fgenesh1_kg.C_80399 Phytophthora capsici estExt_fgenesh1_kg.C_80399 N
estExt_fgenesh2_pg.C_1070085 Branchiostoma floridae estExt_fgenesh2_pg.C_1070085 N
estExt_fgenesh2_pm.C_3240002 Branchiostoma floridae estExt_fgenesh2_pm.C_3240002 N
ETH_00032160 Eimeria tenella ETH_00032160 N
F443_19335 Phytophthora parasitica F443_19335 N
GH18160 Drosophila grimshawi FBgn0125628 I
GK13574 Drosophila willistoni FBgn0215582 I
GE25578 Drosophila yakuba FBgn0242642 I
fgenesh1_pg.C_scaffold_73784000001 Phytophthora capsici fgenesh1_pg.C_scaffold_73784000001 N
fgenesh1_pm.2_#_13 Coccomyxa subellipsoidea C169 fgenesh1_pm.2_#_13 N
fgeneshCV_pg.C_scaffold_2000022 Chlorella vulgaris fgeneshCV_pg.C_scaffold_2000022 N
fgenesh_scip_prom.28083.7036 Phytophthora lateralis fgenesh_scip_prom.28083.7036 N
fgenesh_scip_prom.46568.2049 Phytophthora kernoviae fgenesh_scip_prom.46568.2049 N
GB50764 Apis mellifera GB50764 I
GPUH_0000676401 Gongylonema pulchrum GPUH_0000676401 N
GUITHDRAFT_162866 Guillardia theta GUITHDRAFT_162866 N
HCOI00594600 Haemonchus contortus HCOI00594600 N
HelroG66455 Helobdella robusta HelroG66455 N
HHAL005242-PA Halyomorpha halys HHAL005242-PA I
HMEL009197 Heliconius melpomene HMEL009197 N
HPBE_0001252601 Heligmosomoides bakeri HPBE_0001252601 N
HPLM_0000348901 Haemonchus placei HPLM_0000348901 N
Hsal_04778--XP_394373.1_APIME Harpegnathos saltator Hsal_04778--XP_394373.1_APIME I
ISCW011313 Ixodes scapularis ISCW011313 N
KGM_20190 Danaus plexippus KGM_20190 I
LCUP006380 Lucilia cuprina LCUP006380 N
LotgiG126557 Lottia gigantea LotgiG126557 N
maker-nMf.1.1.scaf18285-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf18285-snap-gene-0.4 N
maker-pir_contig_430-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_430-fgenesh-gene-0.3 N
maker-piw_contig_1911-snap-gene-0.6 Pythium iwayamai maker-piw_contig_1911-snap-gene-0.6 N
maker-pve_contig_105-snap-gene-0.29 Pythium vexans maker-pve_contig_105-snap-gene-0.29 N
MCINX012524 Melitaea cinxia MCINX012524 I
MDOA001488 Musca domestica MDOA001488 I
MhA1_Contig1250.frz3.gene10 Meloidogyne hapla MhA1_Contig1250.frz3.gene10 N
Minc12734 Meloidogyne incognita Minc12734 N
NBR_0000605501 Nippostrongylus brasiliensis NBR_0000605501 N
NCLIV_051130 Neospora caninum NCLIV_051130 N
NECAME_12352 Necator americanus NECAME_12352 N
NEMVEDRAFT_v1g201358 Nematostella vectensis NEMVEDRAFT_v1g201358 I
NV13812 Nasonia vitripennis NV13812 I
Ocbimv22013575m.g Octopus bimaculoides Ocbimv22013575m.g I
OESDEN_05486 Oesophagostomum dentatum OESDEN_05486 N
PEQ_0000413701 Parascaris equorum PEQ_0000413701 N
PHUM036320 Pediculus humanus PHUM036320 N
Phyra74523 Phytophthora ramorum Phyra74523 N
Physo132366 Phytophthora sojae Physo132366 N
PYU1_G003004 Pythium ultimum PYU1_G003004 N
RPRC009760 Rhodnius prolixus RPRC009760 N
SBAD_0000307901 Soboliphyme baturini SBAD_0000307901 N
SINV12391 Solenopsis invicta SINV12391 I
Sjc_0011880 Schistosoma japonicum Sjc_0011880 N
Smp_004360 Schistosoma mansoni Smp_004360 N
SMRZ_0002114501 Schistosoma margrebowiei SMRZ_0002114501 N
SPRG_06372 Saprolegnia parasitica SPRG_06372 N
SPU_001776 Strongylocentrotus purpuratus SPU_001776 N
TCLT_0001081001 Thelazia callipaeda TCLT_0001081001 N
TELCIR_11967 Teladorsagia circumcincta TELCIR_11967 N
tetur18g00680 Tetranychus urticae tetur18g00680 I
TGME49_037260 Toxoplasma gondii TGME49_037260 N
TRE_0001918901 Trichobilharzia regenti TRE_0001918901 N
Y73E7A.1 Caenorhabditis elegans WBGene00022268 N