CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra012938
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra012938
T001078_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.860
0.941
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.860
0.941
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM
KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.823
0.824
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.823
0.824
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.823
0.824
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.803
0.784
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.803
0.784
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.803
0.784
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.794
0.843
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.788
0.745
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.781
0.745
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.752
0.725
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.715
0.647
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.712
0.686
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.711
0.686
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.709
0.686
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.709
0.686
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.703
0.706
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.703
0.706
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.703
0.706
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.698
0.686
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD
HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.698
0.686
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.697
0.686
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.697
0.686
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD
HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.697
0.686
ERF1B
M09703_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.697
0.686
ERF1B
M09704_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.697
0.686
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.694
0.686
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.693
0.667
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.693
0.667
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.690
0.686
ERF15
M00718_2.00
Arabidopsis thaliana
NGSCGSCB
VGSCGSCN
PBM
Chang et al.(2013)
pTH7336
0.689
0.686
ERF15
M06604_2.00
Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF15_colamp_a
0.689
0.686
ERF15
M06605_2.00
Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN
Dap-seq
OMalley et al.(2016)
ERF15_col
0.689
0.686
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.689
0.647
EREBP1
M09708_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.687
0.608
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.683
0.627
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR
YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.681
0.647
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.681
0.647
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD
HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.681
0.686
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.677
0.667
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.677
0.667
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra012938.1-P
AP2
98
150
RHYRGVRRRPWGKYAAEIRDPNKKGSRIWLGTYDRAVEAARAYDQAAFQLRGR
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
1139 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL008417
Aedes aegypti
AAEL008417
N
AALB007196
Anopheles albimanus
AALB007196
N
AARA009694
Anopheles arabiensis
AARA009694
N
AATE006267
Anopheles atroparvus
AATE006267
N
ACAC_0000409101
Angiostrongylus cantonensis
ACAC_0000409101
N
ACEP12759
Atta cephalotes
ACEP12759
I
ACHR002403
Anopheles christyi
ACHR002403
N
ACOC_0001323101
Angiostrongylus costaricensis
ACOC_0001323101
N
ACOM033320
Anopheles coluzzii
ACOM033320
N
ACUA003510
Anopheles culicifacies
ACUA003510
N
ACYPI003297
Acyrthosiphon pisum
ACYPI003297
I
ADAC009894
Anopheles darlingi
ADAC009894
N
ADIR002941
Anopheles dirus
ADIR002941
N
AEPI008570
Anopheles epiroticus
AEPI008570
N
AFAF018499
Anopheles farauti
AFAF018499
N
AFUN011346
Anopheles funestus
AFUN011346
N
AGAP004110
Anopheles gambiae
AGAP004110
N
ALUE_0001851001
Ascaris lumbricoides
ALUE_0001851001
N
AMAM021723
Anopheles maculatus
AMAM021723
N
AMEC005071
Anopheles melas
AMEC005071
N
AMEM002948
Anopheles merus
AMEM002948
N
AMIN003838
Anopheles minimus
AMIN003838
N
ANCCAN_29654
Ancylostoma caninum
ANCCAN_29654
N
ANCCEY_08672
Ancylostoma ceylanicum
ANCCEY_08672
N
AQUA009805
Anopheles quadriannulatus
AQUA009805
N
ASIS023527
Anopheles sinensis
ASIS023527
N
ASTEI04275
Anopheles stephensi
ASTEI04275
N
ASU_10445
Ascaris suum
ASU_10445
N
A_06553
Schistosoma haematobium
A_06553
N
BGIBMGA013514
Bombyx mori
BGIBMGA013514
N
CapteG224864
Capitella teleta
CapteG224864
I
CBN09380
Caenorhabditis brenneri
CBN09380
N
Cflo_06133--XP_394373.1_APIME
Camponotus floridanus
Cflo_06133--XP_394373.1_APIME
I
CGI_10019404
Crassostrea gigas
CGI_10019404
N
CJA05209
Caenorhabditis japonica
CJA05209
N
CLEC002888
Cimex lectularius
CLEC002888
N
CMU_009510
Cryptosporidium muris
CMU_009510
N
CPIJ005084
Culex quinquefasciatus
CPIJ005084
N
CpipJ_CPIJ005084
Culex pipiens
CpipJ_CPIJ005084
N
CRE03905
Caenorhabditis remanei
CRE03905
N
DAPPUDRAFT_303074
Daphnia pulex
DAPPUDRAFT_303074
N
DICVIV_03175
Dictyocaulus viviparus
DICVIV_03175
N
DILT_0001250601
Diphyllobothrium latum
DILT_0001250601
N
ENSCING00000023833
Ciona intestinalis
ENSCING00000023833
N
ccdc124
Oryzias latipes
ENSORLG00000015728
N
estExt_fgenesh1_kg.C_80399
Phytophthora capsici
estExt_fgenesh1_kg.C_80399
N
estExt_fgenesh2_pg.C_1070085
Branchiostoma floridae
estExt_fgenesh2_pg.C_1070085
N
estExt_fgenesh2_pm.C_3240002
Branchiostoma floridae
estExt_fgenesh2_pm.C_3240002
N
ETH_00032160
Eimeria tenella
ETH_00032160
N
F443_19335
Phytophthora parasitica
F443_19335
N
GH18160
Drosophila grimshawi
FBgn0125628
I
GK13574
Drosophila willistoni
FBgn0215582
I
GE25578
Drosophila yakuba
FBgn0242642
I
fgenesh1_pg.C_scaffold_73784000001
Phytophthora capsici
fgenesh1_pg.C_scaffold_73784000001
N
fgenesh1_pm.2_#_13
Coccomyxa subellipsoidea C169
fgenesh1_pm.2_#_13
N
fgeneshCV_pg.C_scaffold_2000022
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_2000022
N
fgenesh_scip_prom.28083.7036
Phytophthora lateralis
fgenesh_scip_prom.28083.7036
N
fgenesh_scip_prom.46568.2049
Phytophthora kernoviae
fgenesh_scip_prom.46568.2049
N
GB50764
Apis mellifera
GB50764
I
GPUH_0000676401
Gongylonema pulchrum
GPUH_0000676401
N
GUITHDRAFT_162866
Guillardia theta
GUITHDRAFT_162866
N
HCOI00594600
Haemonchus contortus
HCOI00594600
N
HelroG66455
Helobdella robusta
HelroG66455
N
HHAL005242-PA
Halyomorpha halys
HHAL005242-PA
I
HMEL009197
Heliconius melpomene
HMEL009197
N
HPBE_0001252601
Heligmosomoides bakeri
HPBE_0001252601
N
HPLM_0000348901
Haemonchus placei
HPLM_0000348901
N
Hsal_04778--XP_394373.1_APIME
Harpegnathos saltator
Hsal_04778--XP_394373.1_APIME
I
ISCW011313
Ixodes scapularis
ISCW011313
N
KGM_20190
Danaus plexippus
KGM_20190
I
LCUP006380
Lucilia cuprina
LCUP006380
N
LotgiG126557
Lottia gigantea
LotgiG126557
N
maker-nMf.1.1.scaf18285-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf18285-snap-gene-0.4
N
maker-pir_contig_430-fgenesh-gene-0.3
Pythium irregulare
maker-pir_contig_430-fgenesh-gene-0.3
N
maker-piw_contig_1911-snap-gene-0.6
Pythium iwayamai
maker-piw_contig_1911-snap-gene-0.6
N
maker-pve_contig_105-snap-gene-0.29
Pythium vexans
maker-pve_contig_105-snap-gene-0.29
N
MCINX012524
Melitaea cinxia
MCINX012524
I
MDOA001488
Musca domestica
MDOA001488
I
MhA1_Contig1250.frz3.gene10
Meloidogyne hapla
MhA1_Contig1250.frz3.gene10
N
Minc12734
Meloidogyne incognita
Minc12734
N
NBR_0000605501
Nippostrongylus brasiliensis
NBR_0000605501
N
NCLIV_051130
Neospora caninum
NCLIV_051130
N
NECAME_12352
Necator americanus
NECAME_12352
N
NEMVEDRAFT_v1g201358
Nematostella vectensis
NEMVEDRAFT_v1g201358
I
NV13812
Nasonia vitripennis
NV13812
I
Ocbimv22013575m.g
Octopus bimaculoides
Ocbimv22013575m.g
I
OESDEN_05486
Oesophagostomum dentatum
OESDEN_05486
N
PEQ_0000413701
Parascaris equorum
PEQ_0000413701
N
PHUM036320
Pediculus humanus
PHUM036320
N
Phyra74523
Phytophthora ramorum
Phyra74523
N
Physo132366
Phytophthora sojae
Physo132366
N
PYU1_G003004
Pythium ultimum
PYU1_G003004
N
RPRC009760
Rhodnius prolixus
RPRC009760
N
SBAD_0000307901
Soboliphyme baturini
SBAD_0000307901
N
SINV12391
Solenopsis invicta
SINV12391
I
Sjc_0011880
Schistosoma japonicum
Sjc_0011880
N
Smp_004360
Schistosoma mansoni
Smp_004360
N
SMRZ_0002114501
Schistosoma margrebowiei
SMRZ_0002114501
N
SPRG_06372
Saprolegnia parasitica
SPRG_06372
N
SPU_001776
Strongylocentrotus purpuratus
SPU_001776
N
TCLT_0001081001
Thelazia callipaeda
TCLT_0001081001
N
TELCIR_11967
Teladorsagia circumcincta
TELCIR_11967
N
tetur18g00680
Tetranychus urticae
tetur18g00680
I
TGME49_037260
Toxoplasma gondii
TGME49_037260
N
TRE_0001918901
Trichobilharzia regenti
TRE_0001918901
N
Y73E7A.1
Caenorhabditis elegans
WBGene00022268
N