CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra030919
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra030919
T001204_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EREBP1
M09708_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.734
0.850
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.732
0.900
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.728
0.900
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.728
0.900
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.723
0.850
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.698
0.825
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra030919.1-P
AP2
104
144
SQYRGIRQRPWGKWAAEIRDPREAEEAARAYDAAARRIRGS
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
254 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI3G60120
Brachypodium distachyon
BRADI3G60120
I
0.736
Bra021543
Brassica rapa
Bra021543
I
0.735
Cagra.1582s0005
Capsella grandiflora
Cagra.1582s0005
I
0.735
Carubv10013925m.g
Capsella rubella
Carubv10013925m.g
I
0.735
PK15234.1
Cannabis sativa
PK15234.1
I
0.735
BGIOSGA005480
Oryza indica
BGIOSGA005480
I
0.734
BGIOSGA022463
Oryza indica
BGIOSGA022463
I
0.734
LPERR02G28780
Leersia perrieri
LPERR02G28780
I
0.734
LPERR06G05580
Leersia perrieri
LPERR06G05580
I
0.734
OB02G41790
Oryza brachyantha
OB02G41790
I
0.734
OB06G15590
Oryza brachyantha
OB06G15590
I
0.734
OBART02G34990
Oryza barthii
OBART02G34990
I
0.734
OBART06G06020
Oryza barthii
OBART06G06020
I
0.734
OGLUM02G36100
Oryza glumaepatula
OGLUM02G36100
I
0.734
OGLUM06G06300
Oryza glumaepatula
OGLUM06G06300
I
0.734
OLONG_008836
Oryza longistaminata
OLONG_008836
I
0.734
OLONG_013314
Oryza longistaminata
OLONG_013314
I
0.734
OMERI02G32980
Oryza meridionalis
OMERI02G32980
I
0.734
OMERI06G07210
Oryza meridionalis
OMERI06G07210
I
0.734
ONIVA02G37060
Oryza nivara
ONIVA02G37060
I
0.734
OPUNC02G32270
Oryza punctata
OPUNC02G32270
I
0.734
OPUNC06G05780
Oryza punctata
OPUNC06G05780
I
0.734
ORGLA02G0302700
Oryza glaberrima
ORGLA02G0302700
I
0.734
ORUFI02G36450
Oryza rufipogon
ORUFI02G36450
I
0.734
ORUFI06G06250
Oryza rufipogon
ORUFI06G06250
I
0.734
EREBP1
Oryza sativa
OS02G0782700
D
0.734
OS06G0194000
Oryza sativa
OS06G0194000
I
0.734
Solyc06g063070.2
Solanum lycopersicum
Solyc06g063070.2
I
0.734
RAP2-2
Arabidopsis thaliana
AT3G14230
D
0.732
Bo5g130490
Brassica oleracea
Bo5g130490
I
0.732
Bra027355
Brassica rapa
Bra027355
I
0.732
MTR_8g022820
Medicago truncatula
MTR_8g022820
I
0.732
RAP2.2
Arabidopsis lyrata
scaffold_301660.1
I
0.732
Cucsa.149280
Cucumis sativus
Cucsa.149280
I
0.732
Aquca_020_00575
Aquilegia coerulea
Aquca_020_00575
I
0.732
Bostr.28625s0277
Boechera stricta
Bostr.28625s0277
I
0.732
Thhalv10020945m.g
Eutrema salsugineum
Thhalv10020945m.g
I
0.732
GLYMA03G42450
Glycine max
GLYMA03G42450
I
0.731
GLYMA07G04950
Glycine max
GLYMA07G04950
I
0.731
GLYMA16G01500
Glycine max
GLYMA16G01500
I
0.731
GLYMA19G45200
Glycine max
GLYMA19G45200
I
0.731
GSMUA_Achr3G10140_001
Musa acuminata
GSMUA_Achr3G10140_001
I
0.731
GSMUA_Achr9G18090_001
Musa acuminata
GSMUA_Achr9G18090_001
I
0.731
MTR_2g105380
Medicago truncatula
MTR_2g105380
I
0.731
POPTR_0001s16400
Populus trichocarpa
POPTR_0001s16400
I
0.731
TCM_029232
Theobroma cacao
TCM_029232
I
0.731
VIT_09s0002g00470
Vitis vinifera
VIT_09s0002g00470
I
0.731
Ca_16180
Cicer arietinum
Ca_16180
I
0.731
Cla012751
Citrullus lanatus
Cla012751
I
0.731
Cla015763
Citrullus lanatus
Cla015763
I
0.731
27585.m000144
Ricinus communis
27585.m000144
I
0.731
cassava31609.valid.m1
Manihot esculenta
cassava31609.valid.m1
I
0.731
cassava31610.valid.m1
Manihot esculenta
cassava31610.valid.m1
I
0.731
Cucsa.359880
Cucumis sativus
Cucsa.359880
I
0.731
Eucgr.I02155
Eucalyptus grandis
Eucgr.I02155
I
0.731
evm.TU.supercontig_481.1
Carica papaya
evm.TU.supercontig_481.1
I
0.731
gene05448-v1.0-hybrid
Fragaria vesca
gene05448-v1.0-hybrid
I
0.731
Gorai.011G056300
Gossypium raimondii
Gorai.011G056300
I
0.731
Lus10013186.g
Linum usitatissimum
Lus10013186.g
I
0.731
Lus10037448.g
Linum usitatissimum
Lus10037448.g
I
0.731
MDP0000308922
Malus domestica
MDP0000308922
I
0.731
MDP0000403580
Malus domestica
MDP0000403580
I
0.731
SapurV1A.1700s0030
Salix purpurea
SapurV1A.1700s0030
I
0.731
GSMUA_Achr6G10870_001
Musa acuminata
GSMUA_Achr6G10870_001
I
0.730
Bo3g184310
Brassica oleracea
Bo3g184310
I
0.729
RAP2-12
Arabidopsis thaliana
AT1G53910
D
0.728
RAP2.12
Arabidopsis lyrata
scaffold_105235.1
I
0.728
Bostr.7128s0090
Boechera stricta
Bostr.7128s0090
I
0.728
Cagra.0769s0008
Capsella grandiflora
Cagra.0769s0008
I
0.728
Carubv10009538m.g
Capsella rubella
Carubv10009538m.g
I
0.728
Thhalv10011606m.g
Eutrema salsugineum
Thhalv10011606m.g
I
0.728
GRMZM2G018398
Zea mays
GRMZM2G018398
I
0.727
GSMUA_Achr2G07300_001
Musa acuminata
GSMUA_Achr2G07300_001
I
0.727
ONIVA06G06990
Oryza nivara
ONIVA06G06990
I
0.727
Si017568m.g
Setaria italica
Si017568m.g
I
0.727
Pavir.Aa00281
Panicum virgatum
Pavir.Aa00281
I
0.727
Pavir.J04875
Panicum virgatum
Pavir.J04875
I
0.727
PGSC0003DMG400004898
Solanum tuberosum
PGSC0003DMG400004898
I
0.726
Gorai.009G147300
Gossypium raimondii
Gorai.009G147300
I
0.725
POPTR_0003s06930
Populus trichocarpa
POPTR_0003s06930
I
0.724
PRUPE_ppa006366mg
Prunus persica
PRUPE_ppa006366mg
I
0.724
Pm013172
Prunus mume
Pm013172
I
0.724
GRMZM2G052667
Zea mays
GRMZM2G052667
I
0.723
GSMUA_Achr3G05800_001
Musa acuminata
GSMUA_Achr3G05800_001
I
0.723
Q7Y1W2_TOBAC
Nicotiana tabacum
Q7Y1W2_TOBAC
D
0.723
cassava42230.valid.m1
Manihot esculenta
cassava42230.valid.m1
I
0.723
cassava42231.valid.m1
Manihot esculenta
cassava42231.valid.m1
I
0.723
Ciclev10025816m.g
Citrus clementina
Ciclev10025816m.g
I
0.723
orange1.1g020391m.g
Citrus sinensis
orange1.1g020391m.g
I
0.723
GSMUA_Achr8G23730_001
Musa acuminata
GSMUA_Achr8G23730_001
I
0.722
SapurV1A.1115s0040
Salix purpurea
SapurV1A.1115s0040
I
0.722
F775_25662
Aegilops tauschii
F775_25662
I
0.721
Traes_6AS_A9D28899F
Triticum aestivum
Traes_6AS_A9D28899F
I
0.721
F775_07667
Aegilops tauschii
F775_07667
I
0.719
mgf009667m
Mimulus guttatus
mgf009667m
I
0.719
mgf010035m
Mimulus guttatus
mgf010035m
I
0.719
F775_15852
Aegilops tauschii
F775_15852
I
0.718
MLOC_10017
Hordeum vulgare
MLOC_10017
I
0.718
MLOC_69925
Hordeum vulgare
MLOC_69925
I
0.718
BGIOSGA030816
Oryza indica
BGIOSGA030816
I
0.716
BRADI4G31040
Brachypodium distachyon
BRADI4G31040
I
0.716
F775_30714
Aegilops tauschii
F775_30714
I
0.716
LPERR09G08060
Leersia perrieri
LPERR09G08060
I
0.716
MLOC_38561
Hordeum vulgare
MLOC_38561
I
0.716
OB09G17960
Oryza brachyantha
OB09G17960
I
0.716
OBART09G11390
Oryza barthii
OBART09G11390
I
0.716
OGLUM09G11780
Oryza glumaepatula
OGLUM09G11780
I
0.716
OLONG_007389
Oryza longistaminata
OLONG_007389
I
0.716
OMERI09G08870
Oryza meridionalis
OMERI09G08870
I
0.716
ONIVA09G11170
Oryza nivara
ONIVA09G11170
I
0.716
OPUNC09G09870
Oryza punctata
OPUNC09G09870
I
0.716
ORGLA09G0085500
Oryza glaberrima
ORGLA09G0085500
I
0.716
ORUFI09G12180
Oryza rufipogon
ORUFI09G12180
I
0.716
OS09G0434500
Oryza sativa
OS09G0434500
I
0.716
Q6TXK7_SOLLC
Solanum lycopersicum
Q6TXK7_SOLLC
I
0.716
Sb02g025530
Sorghum bicolor
Sb02g025530
I
0.716
Si030088m.g
Setaria italica
Si030088m.g
I
0.716
Solyc03g123500.2
Solanum lycopersicum
Solyc03g123500.2
I
0.716
Traes_5AL_14D9A9844
Triticum aestivum
Traes_5AL_14D9A9844
I
0.716
Traes_5BL_7F84602F3
Triticum aestivum
Traes_5BL_7F84602F3
I
0.716
Traes_5DL_26F3B188A
Triticum aestivum
Traes_5DL_26F3B188A
I
0.716
TRIUR3_20682
Triticum urartu
TRIUR3_20682
I
0.716
Pavir.Bb02257
Panicum virgatum
Pavir.Bb02257
I
0.716
Pavir.J01991
Panicum virgatum
Pavir.J01991
I
0.716
PDK_20s1440861g004
Phoenix dactylifera
PDK_20s1440861g004
I
0.715
PGSC0003DMG400009142
Solanum tuberosum
PGSC0003DMG400009142
I
0.712
F775_31907
Aegilops tauschii
F775_31907
I
0.709
Traes_6AL_DAA2D7F8A
Triticum aestivum
Traes_6AL_DAA2D7F8A
I
0.709
Traes_6BL_6AEADC565
Triticum aestivum
Traes_6BL_6AEADC565
I
0.709
Traes_6DL_DD82BD107
Triticum aestivum
Traes_6DL_DD82BD107
I
0.709
TRIUR3_08978
Triticum urartu
TRIUR3_08978
I
0.709
Gorai.010G236100
Gossypium raimondii
Gorai.010G236100
I
0.708
GSMUA_Achr5G24060_001
Musa acuminata
GSMUA_Achr5G24060_001
I
0.707
BRADI1G46690
Brachypodium distachyon
BRADI1G46690
I
0.706
GRMZM2G171179
Zea mays
GRMZM2G171179
I
0.706
OSTLU_9237
Ostreococcus lucimarinus
OSTLU_9237
I
0.706
Sb10g006260
Sorghum bicolor
Sb10g006260
I
0.706
fgenesh1_pm.chr_4_#_35
Ostreococcus RCC809
fgenesh1_pm.chr_4_#_35
I
0.706
estExt_fgenesh1_pg.C_Chr_04.00010339
Ostreococcus tauri
estExt_fgenesh1_pg.C_Chr_04.00010339
I
0.706
GRMZM2G110333
Zea mays
GRMZM2G110333
I
0.705
MLOC_77669
Hordeum vulgare
MLOC_77669
I
0.703
MLOC_78827
Hordeum vulgare
MLOC_78827
I
0.703
BGIOSGA023903
Oryza indica
BGIOSGA023903
I
0.702
OBART07G22260
Oryza barthii
OBART07G22260
I
0.702
OGLUM07G22170
Oryza glumaepatula
OGLUM07G22170
I
0.702
OMERI07G18590
Oryza meridionalis
OMERI07G18590
I
0.702
ONIVA07G20780
Oryza nivara
ONIVA07G20780
I
0.702
OPUNC07G20890
Oryza punctata
OPUNC07G20890
I
0.702
ORGLA07G0171300
Oryza glaberrima
ORGLA07G0171300
I
0.702
ORUFI07G23290
Oryza rufipogon
ORUFI07G23290
I
0.702
OS07G0617000
Oryza sativa
OS07G0617000
I
0.702
AMTR_s00003p00135920
Amborella trichopoda
AMTR_s00003p00135920
I
0.701
AMTR_s00129p00119770
Amborella trichopoda
AMTR_s00129p00119770
I
0.700
mgf005222m
Mimulus guttatus
mgf005222m
I
0.700
Q2TN80_WHEAT
Triticum aestivum
Q2TN80_WHEAT
D
0.698
Sb04g035160
Sorghum bicolor
Sb04g035160
I
0.698
F775_27248
Aegilops tauschii
F775_27248
I
0.697
MLOC_18529
Hordeum vulgare
MLOC_18529
I
0.697
Si006802m.g
Setaria italica
Si006802m.g
I
0.697
Traes_7DS_3570A0055
Triticum aestivum
Traes_7DS_3570A0055
I
0.697
TRIUR3_28474
Triticum urartu
TRIUR3_28474
I
0.697
BGIOSGA011328
Oryza indica
BGIOSGA011328
I
0.696
LPERR03G05400
Leersia perrieri
LPERR03G05400
I
0.696
OBART03G06060
Oryza barthii
OBART03G06060
I
0.696
OGLUM03G06060
Oryza glumaepatula
OGLUM03G06060
I
0.696
OMERI03G05890
Oryza meridionalis
OMERI03G05890
I
0.696
ONIVA03G06080
Oryza nivara
ONIVA03G06080
I
0.696
ORGLA03G0058500
Oryza glaberrima
ORGLA03G0058500
I
0.696
ORUFI03G05890
Oryza rufipogon
ORUFI03G05890
I
0.696
OS03G0183000
Oryza sativa
OS03G0183000
I
0.696
PGSC0003DMG400028853
Solanum tuberosum
PGSC0003DMG400028853
I
0.696
Solyc12g049560.1
Solanum lycopersicum
Solyc12g049560.1
I
0.696
Traes_6BS_2291F7F98
Triticum aestivum
Traes_6BS_2291F7F98
I
0.696
GRMZM2G148333
Zea mays
GRMZM2G148333
I
0.695
OB07G27820
Oryza brachyantha
OB07G27820
I
0.695
Si033388m.g
Setaria italica
Si033388m.g
I
0.695
Aquca_076_00008
Aquilegia coerulea
Aquca_076_00008
I
0.695
GSMUA_AchrUn_randomG19380_001
Musa acuminata
GSMUA_AchrUn_randomG19380_001
I
0.694
estExt_fgenesh1_pg.C_170126
Coccomyxa subellipsoidea C169
estExt_fgenesh1_pg.C_170126
I
0.693
GG.C169_S17_00183
Chlorella vulgaris
GG.C169_S17_00183
I
0.693
MLOC_58276
Hordeum vulgare
MLOC_58276
I
0.692
MLOC_59004
Hordeum vulgare
MLOC_59004
I
0.692
Ca_14758
Cicer arietinum
Ca_14758
I
0.692
GLYMA02G01960
Glycine max
GLYMA02G01960
I
0.691
GLYMA10G02080
Glycine max
GLYMA10G02080
I
0.691
GLYMA19G40070
Glycine max
GLYMA19G40070
I
0.691
GSMUA_AchrUn_randomG09790_001
Musa acuminata
GSMUA_AchrUn_randomG09790_001
I
0.691
GSMUA_AchrUn_randomG27100_001
Musa acuminata
GSMUA_AchrUn_randomG27100_001
I
0.691
LPERR07G19320
Leersia perrieri
LPERR07G19320
I
0.691
MTR_1g087920
Medicago truncatula
MTR_1g087920
I
0.691
PGSC0003DMG400031795
Solanum tuberosum
PGSC0003DMG400031795
I
0.691
POPTR_0014s12090
Populus trichocarpa
POPTR_0014s12090
I
0.691
PRUPE_ppa008730mg
Prunus persica
PRUPE_ppa008730mg
I
0.691
Q84XB2_SOLLC
Solanum lycopersicum
Q84XB2_SOLLC
I
0.691
Solyc09g075420.2
Solanum lycopersicum
Solyc09g075420.2
I
0.691
TCM_004717
Theobroma cacao
TCM_004717
I
0.691
Ca_03481
Cicer arietinum
Ca_03481
I
0.691
Ca_03482
Cicer arietinum
Ca_03482
I
0.691
Cla017662
Citrullus lanatus
Cla017662
I
0.691
29986.m001656
Ricinus communis
29986.m001656
I
0.691
cassava24734.valid.m1
Manihot esculenta
cassava24734.valid.m1
I
0.691
Cucsa.096930
Cucumis sativus
Cucsa.096930
I
0.691
Ciclev10021059m.g
Citrus clementina
Ciclev10021059m.g
I
0.691
Eucgr.H01085
Eucalyptus grandis
Eucgr.H01085
I
0.691
gene11086-v1.0-hybrid
Fragaria vesca
gene11086-v1.0-hybrid
I
0.691
Gorai.004G051600
Gossypium raimondii
Gorai.004G051600
I
0.691
Gorai.004G142800
Gossypium raimondii
Gorai.004G142800
I
0.691
MDP0000288465
Malus domestica
MDP0000288465
I
0.691
orange1.1g019887m.g
Citrus sinensis
orange1.1g019887m.g
I
0.691
SapurV1A.0052s0250
Salix purpurea
SapurV1A.0052s0250
I
0.691
PK12109.1
Cannabis sativa
PK12109.1
I
0.691
GSMUA_Achr8G33590_001
Musa acuminata
GSMUA_Achr8G33590_001
I
0.689
PRUPE_ppa008563mg
Prunus persica
PRUPE_ppa008563mg
I
0.689
Pm008236
Prunus mume
Pm008236
I
0.689
Cla009438
Citrullus lanatus
Cla009438
I
0.688
AMTR_s00003p00133970
Amborella trichopoda
AMTR_s00003p00133970
I
0.687
evm.TU.supercontig_2304.1
Carica papaya
evm.TU.supercontig_2304.1
I
0.687
GLYMA07G37410
Glycine max
GLYMA07G37410
I
0.686
Si030514m.g
Setaria italica
Si030514m.g
I
0.686
Cucsa.069280
Cucumis sativus
Cucsa.069280
I
0.685
MTR_2g435590
Medicago truncatula
MTR_2g435590
I
0.683
TCM_004710
Theobroma cacao
TCM_004710
I
0.683
HRE2
Vitis vinifera
VIT_07s0005g00820
I
0.683
mgf014502m
Mimulus guttatus
mgf014502m
I
0.683
Aquca_003_00658
Aquilegia coerulea
Aquca_003_00658
I
0.683
evm.TU.supercontig_151.30
Carica papaya
evm.TU.supercontig_151.30
I
0.683
Bo4g198690
Brassica oleracea
Bo4g198690
I
0.682
Bra021401
Brassica rapa
Bra021401
I
0.682
Cucsa.252810
Cucumis sativus
Cucsa.252810
I
0.682
gene07057-v1.0-hybrid
Fragaria vesca
gene07057-v1.0-hybrid
I
0.682
Bra001541
Brassica rapa
Bra001541
I
0.681
TCM_021264
Theobroma cacao
TCM_021264
I
0.681
RAP2.3
Vitis vinifera
VIT_05s0077g01860
I
0.681
Ciclev10005701m.g
Citrus clementina
Ciclev10005701m.g
I
0.681
Eucgr.H03965
Eucalyptus grandis
Eucgr.H03965
I
0.681
EuGene.1100010301
Micromonas sp RCC299
EuGene.1100010301
I
0.681
Lus10016827.g
Linum usitatissimum
Lus10016827.g
I
0.681
orange1.1g025382m.g
Citrus sinensis
orange1.1g025382m.g
I
0.681
chr1.CM0442.200.nd
Lotus japonicus
chr1.CM0442.200.nd
I
0.681
LjSGA_141699.1
Lotus japonicus
LjSGA_141699.1
I
0.681
LjT01F24.60.nd
Lotus japonicus
LjT01F24.60.nd
I
0.681
GLYMA15G16260
Glycine max
GLYMA15G16260
I
0.679
cassava37155.valid.m1
Manihot esculenta
cassava37155.valid.m1
I
0.679
GRMZM2G018984
Zea mays
GRMZM2G018984
I
0.678
POPTR_0002s20270
Populus trichocarpa
POPTR_0002s20270
I
0.678
Pm020059
Prunus mume
Pm020059
I
0.678
29726.m004094
Ricinus communis
29726.m004094
I
0.678
cassava43050.valid.m1
Manihot esculenta
cassava43050.valid.m1
I
0.678
Gorai.011G193600
Gossypium raimondii
Gorai.011G193600
I
0.678
SapurV1A.0494s0080
Salix purpurea
SapurV1A.0494s0080
I
0.678
CHLREDRAFT_205919
Chlamydomonas reinhardtii
CHLREDRAFT_205919
I
0.677
OB08G28690
Oryza brachyantha
OB08G28690
I
0.677
Gorai.006G260300
Gossypium raimondii
Gorai.006G260300
I
0.677
SapurV1A.0264s0250
Salix purpurea
SapurV1A.0264s0250
I
0.677