BRADI2G24170 (Brachypodium distachyon)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 BRADI2G24170 T001298_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.810 0.920
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.810 0.920
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.810 0.920
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.810 0.920
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.799 0.880
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.799 0.880
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.740 0.840
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.714 0.840
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.714 0.840
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.714 0.840
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.712 0.820
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.712 0.820
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.712 0.820
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.711 0.760
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.709 0.820
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.704 0.800
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.679 0.780
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.679 0.780
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.679 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G24170.1 AP2 24 75

Links

Other AP2 family TFs
Other Brachypodium distachyon TFs

555 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002092 Ailuropoda melanoleuca ENSAMEG00000002092 I
ENSCSAG00000005904 Chlorocebus sabaeus ENSCSAG00000005904 I
ENSDORG00000014216 Dipodomys ordii ENSDORG00000014216 I
ENSETEG00000018248 Echinops telfairi ENSETEG00000018248 I
ENSMEUG00000001957 Macropus eugenii ENSMEUG00000001957 I
ENSMICG00000009560 Microcebus murinus ENSMICG00000009560 I
ENSMMUG00000001139 Macaca mulatta ENSMMUG00000001139 I
ENSMPUG00000007990 Mustela putorius furo ENSMPUG00000007990 I
ENSNLEG00000017777 Nomascus leucogenys ENSNLEG00000017777 I
ENSP00000373895 Macaca fascicularis ENSP00000373895 I
ENSPPYG00000004523 Pongo abelii ENSPPYG00000004523 I
ENSSTOG00000009140 Ictidomys tridecemlineatus ENSSTOG00000009140 I
POU6F1 Felis catus ENSFCAG00000004408 I
POU6F1 Gorilla gorilla ENSGGOG00000000227 I
POU6F1 Loxodonta africana ENSLAFG00000020901 I
POU6F1 Homo sapiens ENSG00000184271 D
POU6F1 Canis familiaris ENSCAFG00000007790 I
POU6F1 Erinaceus europaeus ENSEEUG00000014085 I
POU6F1 Monodelphis domestica ENSMODG00000018676 I
POU6F1 Equus caballus ENSECAG00000024200 I
POU6F1 Callithrix jacchus ENSCJAG00000017646 I
POU6F1 Otolemur garnettii ENSOGAG00000007973 I
POU6F1 Pan troglodytes ENSPTRG00000004950 I
Pou6f1 Rattus norvegicus ENSRNOG00000004595 I
POU6F1 Tursiops truncatus ENSTTRG00000013841 I
POU6F1 Dasypus novemcinctus ENSDNOG00000009291 I