CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr8G11980_001
(
Musa acuminata
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GSMUA_Achr8G11980_001
T002466_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.752
0.860
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.752
0.860
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.752
0.860
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.752
0.860
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.743
0.780
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.743
0.780
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.743
0.780
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.743
0.780
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.743
0.780
DREB1F
M09701_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.743
0.780
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.730
0.820
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.730
0.820
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.723
0.860
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.723
0.860
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.720
0.820
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.720
0.820
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.720
0.820
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.714
0.740
DREB1E
M09709_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.697
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr8P11980_001
AP2
52
103
PVYKGVRRRNGDKWVCEVREPNKKSRIWLGTFHTAEMAARAHDVAAMALRGR
Links
Other
AP2
family TFs
Other
Musa acuminata
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy