CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_5g010930
(
Medicago truncatula
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
MTR_5g010930
T002884_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.698
0.660
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.688
0.698
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.688
0.698
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.685
0.679
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.685
0.679
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.685
0.679
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.685
0.679
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES94115
AP2
47
104
PVYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGK
Links
Other
AP2
family TFs
Other
Medicago truncatula
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30147.m014313
Ricinus communis
30147.m014313
I
0.694
30190.m011119
Ricinus communis
30190.m011119
I
0.766
30190.m011120
Ricinus communis
30190.m011120
I
0.725
60638.m00016
Ricinus communis
60638.m00016
I
0.702
Aquca_012_00144
Aquilegia coerulea
Aquca_012_00144
I
0.682
Aquca_013_00435
Aquilegia coerulea
Aquca_013_00435
I
0.699
Aquca_013_00436
Aquilegia coerulea
Aquca_013_00436
I
0.689
DREB1A
Arabidopsis thaliana
AT4G25480
D
0.685
DREB1D
Arabidopsis thaliana
AT5G51990
D
0.688
Bo01335s010
Brassica oleracea
Bo01335s010
I
0.677
Bo5g016750
Brassica oleracea
Bo5g016750
I
0.683
Bo9g104770
Brassica oleracea
Bo9g104770
I
0.688
Bostr.15774s0346
Boechera stricta
Bostr.15774s0346
I
0.688
Bostr.22157s0019
Boechera stricta
Bostr.22157s0019
I
0.698
Bostr.7867s0359
Boechera stricta
Bostr.7867s0359
I
0.684
Bostr.7867s0360
Boechera stricta
Bostr.7867s0360
I
0.710
Bostr.7867s0361
Boechera stricta
Bostr.7867s0361
I
0.684
Bra016763
Brassica rapa
Bra016763
I
0.677
Bra019777
Brassica rapa
Bra019777
I
0.682
Bra028290
Brassica rapa
Bra028290
I
0.688
Cagra.0094s0011
Capsella grandiflora
Cagra.0094s0011
I
0.688
Cagra.2248s0026
Capsella grandiflora
Cagra.2248s0026
I
0.713
Cagra.23885s0001
Capsella grandiflora
Cagra.23885s0001
I
0.679
Cagra.28753s0001
Capsella grandiflora
Cagra.28753s0001
I
0.684
Carubv10005709m.g
Capsella rubella
Carubv10005709m.g
I
0.684
Carubv10021910m.g
Capsella rubella
Carubv10021910m.g
I
0.679
Carubv10027759m.g
Capsella rubella
Carubv10027759m.g
I
0.688
cassava18935.valid.m1
Manihot esculenta
cassava18935.valid.m1
I
0.691
cassava35062.m1
Manihot esculenta
cassava35062.m1
I
0.720
cassava41192.m1
Manihot esculenta
cassava41192.m1
I
0.730
Ca_02407
Cicer arietinum
Ca_02407
N
0.728
Ca_03665
Cicer arietinum
Ca_03665
N
0.729
Ca_08732
Cicer arietinum
Ca_08732
I
0.771
chr2.CM0304.640.nd
Lotus japonicus
chr2.CM0304.640.nd
I
0.697
Ciclev10021923m.g
Citrus clementina
Ciclev10021923m.g
I
0.723
Cla006315
Citrullus lanatus
Cla006315
I
0.709
Cla011674
Citrullus lanatus
Cla011674
I
0.749
Cucsa.251030
Cucumis sativus
Cucsa.251030
I
0.711
Cucsa.302750
Cucumis sativus
Cucsa.302750
I
0.724
Eucgr.D01925
Eucalyptus grandis
Eucgr.D01925
I
0.750
Eucgr.E00529
Eucalyptus grandis
Eucgr.E00529
I
0.709
evm.TU.supercontig_74.84
Carica papaya
evm.TU.supercontig_74.84
I
0.721
ddf2
Arabidopsis lyrata
fgenesh2_kg.2__175__AT1G63030.1
D
0.698
CBF2
Arabidopsis lyrata
fgenesh2_kg.7__1712__AT4G25470.1
I
0.678
gene13329-v1.0-hybrid
Fragaria vesca
gene13329-v1.0-hybrid
I
0.707
gene32378-v1.0-hybrid
Fragaria vesca
gene32378-v1.0-hybrid
I
0.765
GLYMA01G42500
Glycine max
GLYMA01G42500
I
0.752
GLYMA05G03560
Glycine max
GLYMA05G03560
I
0.756
GLYMA09G27180
Glycine max
GLYMA09G27180
I
0.709
GLYMA11G19341
Glycine max
GLYMA11G19341
I
0.709
GLYMA12G09130
Glycine max
GLYMA12G09130
I
0.709
GLYMA12G30740
Glycine max
GLYMA12G30740
I
0.691
GLYMA17G14111
Glycine max
GLYMA17G14111
I
0.777
Gorai.007G010100
Gossypium raimondii
Gorai.007G010100
I
0.720
Gorai.008G243600
Gossypium raimondii
Gorai.008G243600
I
0.742
GSMUA_Achr11G21630_001
Musa acuminata
GSMUA_Achr11G21630_001
I
0.701
LjSGA_037211.1
Lotus japonicus
LjSGA_037211.1
I
0.755
LjSGA_077560.1
Lotus japonicus
LjSGA_077560.1
N
0.696
Lus10001871.g
Linum usitatissimum
Lus10001871.g
I
0.685
Lus10006332.g
Linum usitatissimum
Lus10006332.g
I
0.685
Lus10006334.g
Linum usitatissimum
Lus10006334.g
I
0.685
Lus10017829.g
Linum usitatissimum
Lus10017829.g
I
0.708
Lus10029601.g
Linum usitatissimum
Lus10029601.g
I
0.685
Lus10029602.g
Linum usitatissimum
Lus10029602.g
I
0.685
MDP0000154764
Malus domestica
MDP0000154764
I
0.745
MDP0000198054
Malus domestica
MDP0000198054
I
0.758
mgf017136m
Mimulus guttatus
mgf017136m
I
0.693
mgf019061m
Mimulus guttatus
mgf019061m
I
0.691
mgf026642m
Mimulus guttatus
mgf026642m
I
0.714
MTR_4g102660
Medicago truncatula
MTR_4g102660
I
0.753
MTR_5g010910
Medicago truncatula
MTR_5g010910
N
0.741
MTR_5g010940
Medicago truncatula
MTR_5g010940
N
0.741
MTR_6g466130
Medicago truncatula
MTR_6g466130
I
0.685
orange1.1g026103m.g
Citrus sinensis
orange1.1g026103m.g
I
0.680
orange1.1g029015m.g
Citrus sinensis
orange1.1g029015m.g
I
0.725
PGSC0003DMG400004255
Solanum tuberosum
PGSC0003DMG400004255
I
0.699
PGSC0003DMG400012524
Solanum tuberosum
PGSC0003DMG400012524
I
0.695
PGSC0003DMG400012525
Solanum tuberosum
PGSC0003DMG400012525
I
0.734
PK23332.1
Cannabis sativa
PK23332.1
I
0.707
Pm023769
Prunus mume
Pm023769
I
0.743
Pm023772
Prunus mume
Pm023772
I
0.761
Pm023775
Prunus mume
Pm023775
I
0.748
POPTR_0001s08710
Populus trichocarpa
POPTR_0001s08710
I
0.709
POPTR_0001s08720
Populus trichocarpa
POPTR_0001s08720
I
0.683
POPTR_0009s14990
Populus trichocarpa
POPTR_0009s14990
I
0.683
POPTR_0012s13870
Populus trichocarpa
POPTR_0012s13870
I
0.720
POPTR_0015s13830
Populus trichocarpa
POPTR_0015s13830
I
0.714
PRUPE_ppa010800mg
Prunus persica
PRUPE_ppa010800mg
I
0.748
PRUPE_ppa010909mg
Prunus persica
PRUPE_ppa010909mg
I
0.773
PRUPE_ppa010935mg
Prunus persica
PRUPE_ppa010935mg
I
0.705
PRUPE_ppa014628mg
Prunus persica
PRUPE_ppa014628mg
N
0.689
PRUPE_ppa017761mg
Prunus persica
PRUPE_ppa017761mg
I
0.735
PRUPE_ppa021197mg
Prunus persica
PRUPE_ppa021197mg
I
0.743
SapurV1A.0045s0710
Salix purpurea
SapurV1A.0045s0710
I
0.687
SapurV1A.0068s0560
Salix purpurea
SapurV1A.0068s0560
I
0.698
SapurV1A.0219s0320
Salix purpurea
SapurV1A.0219s0320
I
0.683
SapurV1A.0282s0070
Salix purpurea
SapurV1A.0282s0070
I
0.683
SapurV1A.0282s0080
Salix purpurea
SapurV1A.0282s0080
I
0.687
SapurV1A.0400s0160
Salix purpurea
SapurV1A.0400s0160
I
0.698
CBF4
Arabidopsis lyrata
scaffold_801637.1
I
0.688
Solyc03g026270.1
Solanum lycopersicum
Solyc03g026270.1
I
0.686
Solyc03g026280.2
Solanum lycopersicum
Solyc03g026280.2
I
0.684
Solyc03g124110.1
Solanum lycopersicum
Solyc03g124110.1
I
0.681
Solyc08g007820.1
Solanum lycopersicum
Solyc08g007820.1
I
0.708
TCM_016175
Theobroma cacao
TCM_016175
I
0.698
Thhalv10009978m.g
Eutrema salsugineum
Thhalv10009978m.g
I
0.683
Thhalv10015252m.g
Eutrema salsugineum
Thhalv10015252m.g
I
0.688
Thhalv10023865m.g
Eutrema salsugineum
Thhalv10023865m.g
I
0.698
Thhalv10027405m.g
Eutrema salsugineum
Thhalv10027405m.g
I
0.710
VIT_02s0025g04460
Vitis vinifera
VIT_02s0025g04460
I
0.714
VIT_16s0100g00380
Vitis vinifera
VIT_16s0100g00380
I
0.685