CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OGLUM09G04680
(
Oryza glumaepatula
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
OGLUM09G04680
T003306_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.706
0.674
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM09G04680.1
AP2
113
161
PYRGIRQRPWGRWASEIRDPVKGIRVWLGTFDTAEGAARAYDDEVRRIY
Links
Other
AP2
family TFs
Other
Oryza glumaepatula
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A5JTT1_WHEAT
Triticum aestivum
A5JTT1_WHEAT
D
0.706
Si002845m.g
Setaria italica
Si002845m.g
I
0.678
OS01G0313300
Oryza sativa
OS01G0313300
I
0.678
OS09G0286600
Oryza sativa
OS09G0286600
I
0.845
OS09G0287000
Oryza sativa
OS09G0287000
I
0.705
PGSC0003DMG400014240
Solanum tuberosum
PGSC0003DMG400014240
I
0.683
PGSC0003DMG400019693
Solanum tuberosum
PGSC0003DMG400019693
I
0.705
Sb03g012890
Sorghum bicolor
Sb03g012890
I
0.678
Sb07g022180
Sorghum bicolor
Sb07g022180
I
0.681
SELMODRAFT_17703
Selaginella moellendorffii
SELMODRAFT_17703
I
0.681
SELMODRAFT_73134
Selaginella moellendorffii
SELMODRAFT_73134
I
0.681
SELMODRAFT_73164
Selaginella moellendorffii
SELMODRAFT_73164
I
0.686
SELMODRAFT_73169
Selaginella moellendorffii
SELMODRAFT_73169
I
0.686
ORUFI09G04400
Oryza rufipogon
ORUFI09G04400
I
0.845
Solyc03g118190.2
Solanum lycopersicum
Solyc03g118190.2
I
0.683
Solyc04g051360.2
Solanum lycopersicum
Solyc04g051360.2
I
0.690
Traes_2AS_72E9B68D2
Triticum aestivum
Traes_2AS_72E9B68D2
I
0.703
Traes_2BS_5E7287209
Triticum aestivum
Traes_2BS_5E7287209
I
0.703
TRAES3BF171600010CFD_g
Triticum aestivum
TRAES3BF171600010CFD_g
I
0.678
Traes_5BL_98D063967
Triticum aestivum
Traes_5BL_98D063967
I
0.678
Traes_5DL_41E3B1B23
Triticum aestivum
Traes_5DL_41E3B1B23
I
0.678
mgf021642m
Mimulus guttatus
mgf021642m
I
0.681
Eucgr.K02193
Eucalyptus grandis
Eucgr.K02193
I
0.694
Eucgr.K02780
Eucalyptus grandis
Eucgr.K02780
I
0.694
Pavir.Eb02324
Panicum virgatum
Pavir.Eb02324
I
0.678
Pavir.J08480
Panicum virgatum
Pavir.J08480
I
0.678
OLONG_020978
Oryza longistaminata
OLONG_020978
I
0.713
BGIOSGA003364
Oryza indica
BGIOSGA003364
I
0.678
BGIOSGA030065
Oryza indica
BGIOSGA030065
I
0.845
BGIOSGA038064
Oryza indica
BGIOSGA038064
I
0.707
BRADI2G11890
Brachypodium distachyon
BRADI2G11890
I
0.678
GRMZM2G053503
Zea mays
GRMZM2G053503
I
0.678
GRMZM2G169382
Zea mays
GRMZM2G169382
I
0.678
LPERR09G02820
Leersia perrieri
LPERR09G02820
I
0.748
LPERR09G02840
Leersia perrieri
LPERR09G02840
I
0.677
MLOC_51143
Hordeum vulgare
MLOC_51143
I
0.703
OB09G12530
Oryza brachyantha
OB09G12530
I
0.683
OBART01G06430
Oryza barthii
OBART01G06430
I
0.705
OGLUM09G04690
Oryza glumaepatula
OGLUM09G04690
I
0.705
ORUFI09G04420
Oryza rufipogon
ORUFI09G04420
I
0.705
OMERI09G03020
Oryza meridionalis
OMERI09G03020
I
0.845
OMERI09G03030
Oryza meridionalis
OMERI09G03030
I
0.705
OMERI12G11270
Oryza meridionalis
OMERI12G11270
I
0.678
ONIVA09G04180
Oryza nivara
ONIVA09G04180
I
0.845
ONIVA09G04210
Oryza nivara
ONIVA09G04210
I
0.707
OPUNC01G12900
Oryza punctata
OPUNC01G12900
I
0.678
OPUNC09G03530
Oryza punctata
OPUNC09G03530
I
0.845
OPUNC09G03540
Oryza punctata
OPUNC09G03540
I
0.704
ORGLA01G0108600
Oryza glaberrima
ORGLA01G0108600
I
0.678
ORGLA09G0030300
Oryza glaberrima
ORGLA09G0030300
I
0.845
ORGLA09G0030400
Oryza glaberrima
ORGLA09G0030400
I
0.707