CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ORUFI06G06480
(
Oryza rufipogon
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
ORUFI06G06480
T004059_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.691
0.860
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.691
0.860
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.688
0.860
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.688
0.860
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ORUFI06G06480.1
AP2
10
61
TKYRGVRLRKWGKWVSEIRLPNSRERIWLGSYDTPEEAARAFDAAFVCLRGG
Links
Other
AP2
family TFs
Other
Oryza rufipogon
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA022471
Oryza indica
BGIOSGA022471
I
0.814
OBART06G06190
Oryza barthii
OBART06G06190
I
0.812
OGLUM06G06520
Oryza glumaepatula
OGLUM06G06520
I
0.812
OMERI03G32210
Oryza meridionalis
OMERI03G32210
I
0.812
ONIVA06G07190
Oryza nivara
ONIVA06G07190
I
0.812
ORGLA06G0057200
Oryza glaberrima
ORGLA06G0057200
I
0.812
Si008104m.g
Setaria italica
Si008104m.g
I
0.738
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.710
MTR_3g105510
Medicago truncatula
MTR_3g105510
I
0.710
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.705
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.704
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.704
Bo6g086740
Brassica oleracea
Bo6g086740
I
0.699
Cagra.0402s0035
Capsella grandiflora
Cagra.0402s0035
I
0.699
Carubv10020965m.g
Capsella rubella
Carubv10020965m.g
I
0.699
GSMUA_Achr9G14360_001
Musa acuminata
GSMUA_Achr9G14360_001
I
0.697
BGIOSGA028781
Oryza indica
BGIOSGA028781
I
0.696
GRMZM2G163745
Zea mays
GRMZM2G163745
I
0.696
LPERR08G14000
Leersia perrieri
LPERR08G14000
I
0.696
OB08G24280
Oryza brachyantha
OB08G24280
I
0.696
OBART08G16950
Oryza barthii
OBART08G16950
I
0.696
OGLUM08G17690
Oryza glumaepatula
OGLUM08G17690
I
0.696
ONIVA08G18470
Oryza nivara
ONIVA08G18470
I
0.696
OPUNC08G14840
Oryza punctata
OPUNC08G14840
I
0.696
ORUFI08G18850
Oryza rufipogon
ORUFI08G18850
I
0.696
OS08G0454000
Oryza sativa
OS08G0454000
I
0.696
Si015027m.g
Setaria italica
Si015027m.g
I
0.696
Pavir.Fa00741
Panicum virgatum
Pavir.Fa00741
I
0.696
Pavir.Fb01602
Panicum virgatum
Pavir.Fb01602
I
0.696
OB06G15740
Oryza brachyantha
OB06G15740
N
0.695
Thhalv10009812m.g
Eutrema salsugineum
Thhalv10009812m.g
I
0.695
Bra003780
Brassica rapa
Bra003780
I
0.692
Pavir.J00593
Panicum virgatum
Pavir.J00593
I
0.692
ERF018
Arabidopsis thaliana
AT1G74930
D
0.691
ORA47
Arabidopsis lyrata
fgenesh2_kg.2__1761__AT1G74930.1
I
0.691
Bostr.3288s0141
Boechera stricta
Bostr.3288s0141
I
0.691
Eucgr.C03297
Eucalyptus grandis
Eucgr.C03297
I
0.691
Si019636m.g
Setaria italica
Si019636m.g
I
0.690
Traes_6DL_FA861D610
Triticum aestivum
Traes_6DL_FA861D610
I
0.690
Pavir.Aa00296
Panicum virgatum
Pavir.Aa00296
I
0.690
TRAES3BF084200010CFD_g
Triticum aestivum
TRAES3BF084200010CFD_g
I
0.689
ERF017
Arabidopsis thaliana
AT1G19210
D
0.688
Bo8g102870
Brassica oleracea
Bo8g102870
I
0.688
Bra031069
Brassica rapa
Bra031069
I
0.688
fgenesh2_kg.1__2098__AT1G19210.1
Arabidopsis lyrata
fgenesh2_kg.1__2098__AT1G19210.1
I
0.688
POPTR_0006s23480
Populus trichocarpa
POPTR_0006s23480
I
0.688
ORA47
Vitis vinifera
VIT_04s0008g02230
I
0.688
Cagra.1961s0079
Capsella grandiflora
Cagra.1961s0079
I
0.688
Carubv10011394m.g
Capsella rubella
Carubv10011394m.g
I
0.688
SapurV1A.0373s0040
Salix purpurea
SapurV1A.0373s0040
I
0.688
SapurV1A.2229s0010
Salix purpurea
SapurV1A.2229s0010
I
0.688
BRADI3G37544
Brachypodium distachyon
BRADI3G37544
I
0.687
F775_23111
Aegilops tauschii
F775_23111
I
0.686
gene12919-v1.0-hybrid
Fragaria vesca
gene12919-v1.0-hybrid
I
0.686
evm.TU.supercontig_266.5
Carica papaya
evm.TU.supercontig_266.5
I
0.685
GRMZM2G097081
Zea mays
GRMZM2G097081
I
0.684
TCM_037486
Theobroma cacao
TCM_037486
I
0.684
mgf024162m
Mimulus guttatus
mgf024162m
I
0.684
cassava10604.m1
Manihot esculenta
cassava10604.m1
I
0.683
SapurV1A.0057s0300
Salix purpurea
SapurV1A.0057s0300
I
0.683
Bo6g119120
Brassica oleracea
Bo6g119120
I
0.680
PGSC0003DMG400023295
Solanum tuberosum
PGSC0003DMG400023295
N
0.679
mgf017314m
Mimulus guttatus
mgf017314m
N
0.679
OGLUM06G08330
Oryza glumaepatula
OGLUM06G08330
N
0.678
OMERI06G09430
Oryza meridionalis
OMERI06G09430
N
0.678
mgf021940m
Mimulus guttatus
mgf021940m
I
0.678
LPERR02G28660
Leersia perrieri
LPERR02G28660
I
0.677
Solyc07g042230.1
Solanum lycopersicum
Solyc07g042230.1
N
0.677