PGSC0003DMG400000091 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400000091 T004327_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.697 0.760
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.690 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400000274 AP2 93 144

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.835
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.757
Ca_05803 Cicer arietinum Ca_05803 I 0.741
Bra008460 Brassica rapa Bra008460 N 0.715
mgf008137m Mimulus guttatus mgf008137m I 0.713
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.709
Pm013734 Prunus mume Pm013734 I 0.709
MDP0000264187 Malus domestica MDP0000264187 I 0.709
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.709
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.709
Bo3g022760 Brassica oleracea Bo3g022760 I 0.707
Bra029079 Brassica rapa Bra029079 I 0.707
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.706
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.706
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.706
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.705
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.705
mgf023662m Mimulus guttatus mgf023662m I 0.705
mgf023807m Mimulus guttatus mgf023807m I 0.705
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.705
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.705
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.705
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.705
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.704
Cla015583 Citrullus lanatus Cla015583 I 0.704
27446.m000475 Ricinus communis 27446.m000475 I 0.704
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.704
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.704
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.704
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.704
MTR_8g099215 Medicago truncatula MTR_8g099215 I 0.703
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.703
TCM_027348 Theobroma cacao TCM_027348 I 0.703
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.703
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.703
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.702
Ca_20041 Cicer arietinum Ca_20041 I 0.702
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.701
SapurV1A.1043s0120 Salix purpurea SapurV1A.1043s0120 I 0.700
SapurV1A.1442s0010 Salix purpurea SapurV1A.1442s0010 I 0.700
SapurV1A.2151s0020 Salix purpurea SapurV1A.2151s0020 I 0.700
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.699
AMTR_s00097p00165740 Amborella trichopoda AMTR_s00097p00165740 I 0.699
GLYMA08G02460 Glycine max GLYMA08G02460 I 0.698
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.698
CRF2 Arabidopsis thaliana AT4G23750 D 0.697
CRF2 Arabidopsis lyrata fgenesh2_kg.7__1924__AT4G23750.1 I 0.697
MTR_3g090760 Medicago truncatula MTR_3g090760 I 0.697
Ca_03948 Cicer arietinum Ca_03948 I 0.697
Bostr.7867s0178 Boechera stricta Bostr.7867s0178 I 0.697
Cagra.1226s0039 Capsella grandiflora Cagra.1226s0039 I 0.697
Carubv10005160m.g Capsella rubella Carubv10005160m.g I 0.697
PRUPE_ppa008720mg Prunus persica PRUPE_ppa008720mg I 0.696
Cla004291 Citrullus lanatus Cla004291 I 0.696
Pm019793 Prunus mume Pm019793 I 0.696
Cucsa.012850 Cucumis sativus Cucsa.012850 I 0.696
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.695
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.695
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.695
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.695
OS05G0316800 Oryza sativa OS05G0316800 N 0.695
Aquca_037_00045 Aquilegia coerulea Aquca_037_00045 I 0.695
CRF1 Arabidopsis thaliana AT4G11140 I 0.694
CRF1 Arabidopsis lyrata fgenesh2_kg.6__3086__AT4G11140.1 I 0.694
gene13118-v1.0-hybrid Fragaria vesca gene13118-v1.0-hybrid I 0.694
Ciclev10005220m.g Citrus clementina Ciclev10005220m.g I 0.693
orange1.1g047455m.g Citrus sinensis orange1.1g047455m.g I 0.693
Bo3g045150 Brassica oleracea Bo3g045150 I 0.692
POPTR_0012s01260 Populus trichocarpa POPTR_0012s01260 I 0.692
cassava32471.m1 Manihot esculenta cassava32471.m1 I 0.692
Bostr.25463s0212 Boechera stricta Bostr.25463s0212 I 0.692
Carubv10001539m.g Capsella rubella Carubv10001539m.g I 0.692
Thhalv10029132m.g Eutrema salsugineum Thhalv10029132m.g I 0.692
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.691
CRF3 Arabidopsis thaliana AT5G53290 D 0.690
POPTR_0015s06070 Populus trichocarpa POPTR_0015s06070 I 0.690
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.690
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.690
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.690
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.690
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.690
SapurV1A.1017s0070 Salix purpurea SapurV1A.1017s0070 I 0.690
Bo2g045930 Brassica oleracea Bo2g045930 I 0.689
Bo9g111050 Brassica oleracea Bo9g111050 I 0.689
Bra003068 Brassica rapa Bra003068 I 0.689
Bra022643 Brassica rapa Bra022643 I 0.689
POPTR_0003s13610 Populus trichocarpa POPTR_0003s13610 I 0.689
SapurV1A.0237s0040 Salix purpurea SapurV1A.0237s0040 I 0.689
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.689
Cla011108 Citrullus lanatus Cla011108 I 0.688
Cucsa.107190 Cucumis sativus Cucsa.107190 I 0.688
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.688
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.687
GLYMA05G37120 Glycine max GLYMA05G37120 I 0.687
cassava27467.m1 Manihot esculenta cassava27467.m1 I 0.687
GLYMA04G41740 Glycine max GLYMA04G41740 I 0.686
GLYMA06G13040 Glycine max GLYMA06G13040 I 0.686
mgf018116m Mimulus guttatus mgf018116m I 0.686
PK28823.1 Cannabis sativa PK28823.1 I 0.686
PGSC0003DMG400002350 Solanum tuberosum PGSC0003DMG400002350 I 0.685
PGSC0003DMG400036493 Solanum tuberosum PGSC0003DMG400036493 I 0.685
Solyc03g007460.1 Solanum lycopersicum Solyc03g007460.1 I 0.685
Solyc06g051840.1 Solanum lycopersicum Solyc06g051840.1 I 0.685
TCM_015336 Theobroma cacao TCM_015336 I 0.685
VIT_06s0004g08190 Vitis vinifera VIT_06s0004g08190 I 0.685
VIT_16s0050g02400 Vitis vinifera VIT_16s0050g02400 I 0.685
cassava7228.valid.m1 Manihot esculenta cassava7228.valid.m1 I 0.685
Eucgr.K00321 Eucalyptus grandis Eucgr.K00321 I 0.685
Gorai.006G200400 Gossypium raimondii Gorai.006G200400 I 0.685
Gorai.008G271200 Gossypium raimondii Gorai.008G271200 I 0.685
Lus10027573.g Linum usitatissimum Lus10027573.g I 0.685
Lus10039324.g Linum usitatissimum Lus10039324.g I 0.685
MDP0000308379 Malus domestica MDP0000308379 I 0.685
MDP0000854039 Malus domestica MDP0000854039 I 0.685
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.685
GLYMA01G43350 Glycine max GLYMA01G43350 I 0.684
GLYMA11G02140 Glycine max GLYMA11G02140 I 0.684
PGSC0003DMG400012305 Solanum tuberosum PGSC0003DMG400012305 I 0.684
POPTR_0001s10300 Populus trichocarpa POPTR_0001s10300 I 0.684
PRUPE_ppa025804mg Prunus persica PRUPE_ppa025804mg I 0.684
Solyc08g081960.1 Solanum lycopersicum Solyc08g081960.1 I 0.684
TCM_016396 Theobroma cacao TCM_016396 I 0.684
Cla011573 Citrullus lanatus Cla011573 I 0.684
Pm024096 Prunus mume Pm024096 I 0.684
cassava12291.valid.m1 Manihot esculenta cassava12291.valid.m1 I 0.684
cassava39307.m1 Manihot esculenta cassava39307.m1 I 0.684
Cucsa.303720 Cucumis sativus Cucsa.303720 I 0.684
Ciclev10021073m.g Citrus clementina Ciclev10021073m.g I 0.684
Gorai.004G135700 Gossypium raimondii Gorai.004G135700 I 0.684
Gorai.008G252300 Gossypium raimondii Gorai.008G252300 I 0.684
orange1.1g036154m.g Citrus sinensis orange1.1g036154m.g I 0.684
PK16787.1 Cannabis sativa PK16787.1 I 0.684
28641.m000082 Ricinus communis 28641.m000082 I 0.683
30190.m010791 Ricinus communis 30190.m010791 I 0.683
evm.TU.supercontig_122.27 Carica papaya evm.TU.supercontig_122.27 I 0.683
MDP0000229285 Malus domestica MDP0000229285 I 0.683
MDP0000783818 Malus domestica MDP0000783818 I 0.683
GLYMA02G40320 Glycine max GLYMA02G40320 I 0.682
30169.m006542 Ricinus communis 30169.m006542 I 0.682
SapurV1A.1111s0070 Salix purpurea SapurV1A.1111s0070 I 0.682
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.682
GLYMA13G08490 Glycine max GLYMA13G08490 I 0.681
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.681
SapurV1A.0035s0790 Salix purpurea SapurV1A.0035s0790 I 0.681
ERF084 Arabidopsis thaliana AT1G80580 N 0.680
Bo1g037170 Brassica oleracea Bo1g037170 I 0.680
Bo7g109100 Brassica oleracea Bo7g109100 I 0.680
Bra013730 Brassica rapa Bra013730 I 0.680
Bra019270 Brassica rapa Bra019270 I 0.680
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.680
TCM_005203 Theobroma cacao TCM_005203 I 0.680
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.680
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.680
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.680
Eucgr.A02669 Eucalyptus grandis Eucgr.A02669 I 0.679
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.679
Thhalv10026857m.g Eutrema salsugineum Thhalv10026857m.g I 0.679
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.678
GLYMA11G31401 Glycine max GLYMA11G31401 I 0.678
gene18922-v1.0-hybrid Fragaria vesca gene18922-v1.0-hybrid I 0.678
POPTR_0014s09020 Populus trichocarpa POPTR_0014s09020 I 0.677
Gorai.003G082200 Gossypium raimondii Gorai.003G082200 I 0.677
SapurV1A.0013s0740 Salix purpurea SapurV1A.0013s0740 I 0.677