CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400012038
(
Solanum tuberosum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
PGSC0003DMG400012038
T004384_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.863
0.979
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC
GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.854
0.979
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400031398
AP2
107
156
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
PGSC0003DMT400031400
AP2
107
156
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
PGSC0003DMT400031401
AP2
107
156
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
PGSC0003DMT400031402
AP2
107
156
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
Links
Other
AP2
family TFs
Other
Solanum tuberosum
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G416701
Zea mays
GRMZM2G416701
I
0.866
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
0.866
Sb10g001490
Sorghum bicolor
Sb10g001490
I
0.866
Cla020387
Citrullus lanatus
Cla020387
I
0.866
Cucsa.165940
Cucumis sativus
Cucsa.165940
I
0.866
Gorai.003G139800
Gossypium raimondii
Gorai.003G139800
I
0.866
Gorai.011G241700
Gossypium raimondii
Gorai.011G241700
I
0.866
Lus10040365.g
Linum usitatissimum
Lus10040365.g
I
0.866
PK16652.1
Cannabis sativa
PK16652.1
I
0.866
TOE2
Arabidopsis thaliana
AT5G60120
D
0.863
Bo9g141100
Brassica oleracea
Bo9g141100
I
0.863
Bra002510
Brassica rapa
Bra002510
I
0.863
Bra020262
Brassica rapa
Bra020262
I
0.863
Bostr.26833s0222
Boechera stricta
Bostr.26833s0222
I
0.863
Cagra.1317s0005
Capsella grandiflora
Cagra.1317s0005
I
0.863
Carubv10026292m.g
Capsella rubella
Carubv10026292m.g
I
0.863
Thhalv10013367m.g
Eutrema salsugineum
Thhalv10013367m.g
I
0.863
SMZ
Arabidopsis thaliana
AT3G54990
D
0.854
Bo8g087280
Brassica oleracea
Bo8g087280
I
0.854
Bra007123
Brassica rapa
Bra007123
I
0.854
SMZ
Arabidopsis lyrata
fgenesh2_kg.5__1910__AT3G54990.1
I
0.854
Bostr.0697s0115
Boechera stricta
Bostr.0697s0115
I
0.854
Cagra.1742s0021
Capsella grandiflora
Cagra.1742s0021
I
0.854
Carubv10018526m.g
Capsella rubella
Carubv10018526m.g
I
0.854
Eucgr.G02793
Eucalyptus grandis
Eucgr.G02793
I
0.854
Thhalv10010513m.g
Eutrema salsugineum
Thhalv10010513m.g
I
0.854
GLYMA02G09600
Glycine max
GLYMA02G09600
I
0.850
GLYMA10G22390
Glycine max
GLYMA10G22390
I
0.850
MTR_1g049140
Medicago truncatula
MTR_1g049140
I
0.848
Bo6g068410
Brassica oleracea
Bo6g068410
I
0.839
PRUPE_ppa018704mg
Prunus persica
PRUPE_ppa018704mg
I
0.833
Pm018608
Prunus mume
Pm018608
I
0.833
gene23316-v1.0-hybrid
Fragaria vesca
gene23316-v1.0-hybrid
I
0.829
MDP0000281079
Malus domestica
MDP0000281079
I
0.824
MDP0000285955
Malus domestica
MDP0000285955
I
0.824
Ca_26761
Cicer arietinum
Ca_26761
I
0.816
Cagra.0716s0040
Capsella grandiflora
Cagra.0716s0040
I
0.794
Carubv10023614m.g
Capsella rubella
Carubv10023614m.g
I
0.794
SNZ
Arabidopsis thaliana
AT2G39250
I
0.787
SNZ
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001673
I
0.787
Bostr.23794s0149
Boechera stricta
Bostr.23794s0149
I
0.787
Al_scaffold_0003_2798
Arabidopsis lyrata
Al_scaffold_0003_2798
I
0.684
MDP0000130802
Malus domestica
MDP0000130802
I
0.684