CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400014417
(
Solanum tuberosum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
PGSC0003DMG400014417
T004416_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR
YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.741
0.891
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.741
0.891
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.741
0.891
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.739
0.826
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.739
0.826
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.739
0.826
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.706
0.804
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC
GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.681
0.761
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.681
0.761
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.681
0.761
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.679
0.696
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.679
0.696
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.679
0.696
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400037359
AP2
29
79
RFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAAKAYDTAARTLRGP
Links
Other
AP2
family TFs
Other
Solanum tuberosum
TFs
220 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400022305
Solanum tuberosum
PGSC0003DMG400022305
I
0.817
29640.m000403
Ricinus communis
29640.m000403
I
0.817
Solyc10g006130.1
Solanum lycopersicum
Solyc10g006130.1
I
0.810
Solyc07g064890.1
Solanum lycopersicum
Solyc07g064890.1
I
0.806
Ciclev10009361m.g
Citrus clementina
Ciclev10009361m.g
I
0.806
orange1.1g045783m.g
Citrus sinensis
orange1.1g045783m.g
I
0.806
PK25211.1
Cannabis sativa
PK25211.1
I
0.806
SapurV1A.0126s0320
Salix purpurea
SapurV1A.0126s0320
I
0.798
SapurV1A.0126s0330
Salix purpurea
SapurV1A.0126s0330
I
0.798
POPTR_0001s36610
Populus trichocarpa
POPTR_0001s36610
I
0.797
PRUPE_ppa010804mg
Prunus persica
PRUPE_ppa010804mg
I
0.796
VIT_12s0059g01460
Vitis vinifera
VIT_12s0059g01460
I
0.796
Pm014953
Prunus mume
Pm014953
I
0.796
mgf016282m
Mimulus guttatus
mgf016282m
I
0.796
Ciclev10016668m.g
Citrus clementina
Ciclev10016668m.g
I
0.796
evm.TU.supercontig_12.251
Carica papaya
evm.TU.supercontig_12.251
I
0.796
gene01152-v1.0-hybrid
Fragaria vesca
gene01152-v1.0-hybrid
I
0.796
MDP0000839828
Malus domestica
MDP0000839828
I
0.796
orange1.1g027990m.g
Citrus sinensis
orange1.1g027990m.g
I
0.796
mgf007166m
Mimulus guttatus
mgf007166m
I
0.795
Pm011907
Prunus mume
Pm011907
I
0.791
MDP0000542633
Malus domestica
MDP0000542633
I
0.791
MDP0000629527
Malus domestica
MDP0000629527
I
0.791
Aquca_027_00311
Aquilegia coerulea
Aquca_027_00311
I
0.786
evm.TU.supercontig_132.31
Carica papaya
evm.TU.supercontig_132.31
I
0.783
Cla005423
Citrullus lanatus
Cla005423
I
0.779
PRUPE_ppa010893mg
Prunus persica
PRUPE_ppa010893mg
I
0.774
cassava43266.valid.m1
Manihot esculenta
cassava43266.valid.m1
I
0.774
chr2.LjT24P12.30.nd
Lotus japonicus
chr2.LjT24P12.30.nd
I
0.773
MDP0000243113
Malus domestica
MDP0000243113
I
0.769
MDP0000744693
Malus domestica
MDP0000744693
I
0.769
Bo6g022410
Brassica oleracea
Bo6g022410
I
0.768
GLYMA02G43500
Glycine max
GLYMA02G43500
I
0.768
GLYMA14G05470
Glycine max
GLYMA14G05470
I
0.768
GSMUA_Achr1G18230_001
Musa acuminata
GSMUA_Achr1G18230_001
I
0.767
Cucsa.042770
Cucumis sativus
Cucsa.042770
I
0.767
Lus10029987.g
Linum usitatissimum
Lus10029987.g
I
0.765
Lus10035329.g
Linum usitatissimum
Lus10035329.g
I
0.765
Gorai.002G092900
Gossypium raimondii
Gorai.002G092900
I
0.762
VIT_19s0090g01080
Vitis vinifera
VIT_19s0090g01080
I
0.761
Cla003319
Citrullus lanatus
Cla003319
I
0.759
Cucsa.190200
Cucumis sativus
Cucsa.190200
I
0.759
GSMUA_Achr4G04060_001
Musa acuminata
GSMUA_Achr4G04060_001
I
0.757
GSMUA_Achr4G11430_001
Musa acuminata
GSMUA_Achr4G11430_001
I
0.757
GLYMA02G46340
Glycine max
GLYMA02G46340
I
0.753
Cucsa.139820
Cucumis sativus
Cucsa.139820
I
0.752
Gorai.007G312200
Gossypium raimondii
Gorai.007G312200
I
0.748
GSMUA_Achr4G06170_001
Musa acuminata
GSMUA_Achr4G06170_001
I
0.744
TCM_030804
Theobroma cacao
TCM_030804
I
0.743
Cagra.0952s0001
Capsella grandiflora
Cagra.0952s0001
I
0.743
Carubv10010284m.g
Capsella rubella
Carubv10010284m.g
I
0.743
Gorai.009G443400
Gossypium raimondii
Gorai.009G443400
I
0.743
GLYMA14G02360
Glycine max
GLYMA14G02360
I
0.742
Cla013723
Citrullus lanatus
Cla013723
I
0.742
Thhalv10021393m.g
Eutrema salsugineum
Thhalv10021393m.g
I
0.742
ERF3
Arabidopsis thaliana
AT1G50640
D
0.741
Thhalv10011689m.g
Eutrema salsugineum
Thhalv10011689m.g
I
0.741
GSMUA_AchrUn_randomG06910_001
Musa acuminata
GSMUA_AchrUn_randomG06910_001
I
0.740
ERF7
Arabidopsis thaliana
AT3G20310
D
0.739
Eucgr.A01091
Eucalyptus grandis
Eucgr.A01091
I
0.739
LPERR02G05920
Leersia perrieri
LPERR02G05920
I
0.738
OPUNC02G05940
Oryza punctata
OPUNC02G05940
I
0.738
cassava34729.m1
Manihot esculenta
cassava34729.m1
I
0.738
BRADI3G06562
Brachypodium distachyon
BRADI3G06562
I
0.737
GRMZM2G079653
Zea mays
GRMZM2G079653
I
0.737
GRMZM2G146028
Zea mays
GRMZM2G146028
I
0.737
PGSC0003DMG400000681
Solanum tuberosum
PGSC0003DMG400000681
I
0.737
Sb04g006080
Sorghum bicolor
Sb04g006080
I
0.737
Pavir.Aa03102
Panicum virgatum
Pavir.Aa03102
I
0.737
Pavir.Ab00660
Panicum virgatum
Pavir.Ab00660
I
0.737
Ca_17824
Cicer arietinum
Ca_17824
I
0.736
GLYMA03G31640
Glycine max
GLYMA03G31640
I
0.735
Lus10031526.g
Linum usitatissimum
Lus10031526.g
I
0.734
chr1.CM0375.170.nd
Lotus japonicus
chr1.CM0375.170.nd
I
0.730
OGLUM02G06860
Oryza glumaepatula
OGLUM02G06860
I
0.729
OMERI02G07840
Oryza meridionalis
OMERI02G07840
I
0.729
ORGLA02G0063000
Oryza glaberrima
ORGLA02G0063000
I
0.729
ORUFI02G06880
Oryza rufipogon
ORUFI02G06880
I
0.729
Solyc07g049490.1
Solanum lycopersicum
Solyc07g049490.1
I
0.729
Bra018864
Brassica rapa
Bra018864
I
0.727
ERF3
Arabidopsis lyrata
fgenesh2_kg.1__4150__AT1G50640.1
I
0.727
Bostr.26675s0113
Boechera stricta
Bostr.26675s0113
I
0.727
AMTR_s00002p00264660
Amborella trichopoda
AMTR_s00002p00264660
I
0.722
GSMUA_Achr3G29290_001
Musa acuminata
GSMUA_Achr3G29290_001
I
0.722
GSMUA_Achr4G06660_001
Musa acuminata
GSMUA_Achr4G06660_001
I
0.722
GSMUA_Achr5G09940_001
Musa acuminata
GSMUA_Achr5G09940_001
I
0.722
Sb03g037085
Sorghum bicolor
Sb03g037085
I
0.722
VIT_07s0141g00690
Vitis vinifera
VIT_07s0141g00690
I
0.722
VIT_14s0081g00520
Vitis vinifera
VIT_14s0081g00520
I
0.722
PK02998.1
Cannabis sativa
PK02998.1
I
0.722
GSMUA_Achr6G01440_001
Musa acuminata
GSMUA_Achr6G01440_001
I
0.721
Ca_12205
Cicer arietinum
Ca_12205
I
0.720
Pavir.Eb03165
Panicum virgatum
Pavir.Eb03165
I
0.720
gene03450-v1.0-hybrid
Fragaria vesca
gene03450-v1.0-hybrid
I
0.719
POPTR_0002s04430
Populus trichocarpa
POPTR_0002s04430
I
0.717
PRUPE_ppa022435mg
Prunus persica
PRUPE_ppa022435mg
I
0.717
Pm020210
Prunus mume
Pm020210
I
0.717
GSMUA_Achr3G13010_001
Musa acuminata
GSMUA_Achr3G13010_001
I
0.716
e_gw1.124.59.1
Physcomitrella patens
e_gw1.124.59.1
I
0.716
estExt_gwp_gw1.C_1270048
Physcomitrella patens
estExt_gwp_gw1.C_1270048
I
0.716
gw1.90.191.1
Physcomitrella patens
gw1.90.191.1
I
0.716
gene21403-v1.0-hybrid
Fragaria vesca
gene21403-v1.0-hybrid
I
0.716
Aquca_017_00628
Aquilegia coerulea
Aquca_017_00628
I
0.715
SELMODRAFT_49950
Selaginella moellendorffii
SELMODRAFT_49950
I
0.714
SELMODRAFT_73142
Selaginella moellendorffii
SELMODRAFT_73142
I
0.714
Gorai.013G169500
Gossypium raimondii
Gorai.013G169500
I
0.711
GLYMA06G44430
Glycine max
GLYMA06G44430
I
0.710
GLYMA12G13315
Glycine max
GLYMA12G13315
I
0.710
Aquca_036_00073
Aquilegia coerulea
Aquca_036_00073
I
0.710
GLYMA08G43300
Glycine max
GLYMA08G43300
I
0.708
GLYMA18G10290
Glycine max
GLYMA18G10290
I
0.708
GSMUA_Achr6G00240_001
Musa acuminata
GSMUA_Achr6G00240_001
I
0.708
Cagra.0316s0033
Capsella grandiflora
Cagra.0316s0033
I
0.708
Carubv10014475m.g
Capsella rubella
Carubv10014475m.g
I
0.708
SELMODRAFT_129122
Selaginella moellendorffii
SELMODRAFT_129122
I
0.707
SELMODRAFT_17648
Selaginella moellendorffii
SELMODRAFT_17648
I
0.707
GLYMA13G31010
Glycine max
GLYMA13G31010
I
0.706
GLYMA15G08360
Glycine max
GLYMA15G08360
I
0.706
MTR_2g014300
Medicago truncatula
MTR_2g014300
I
0.706
PGSC0003DMG400029713
Solanum tuberosum
PGSC0003DMG400029713
I
0.706
POPTR_0004s04700
Populus trichocarpa
POPTR_0004s04700
I
0.706
POPTR_0011s05570
Populus trichocarpa
POPTR_0011s05570
I
0.706
PRUPE_ppa012385mg
Prunus persica
PRUPE_ppa012385mg
I
0.706
Solyc02g077840.1
Solanum lycopersicum
Solyc02g077840.1
I
0.706
TCM_029823
Theobroma cacao
TCM_029823
I
0.706
ERF12
Vitis vinifera
VIT_10s0003g00130
I
0.706
Ca_00326
Cicer arietinum
Ca_00326
I
0.706
Cla020002
Citrullus lanatus
Cla020002
I
0.706
Pm010083
Prunus mume
Pm010083
I
0.706
30190.m011323
Ricinus communis
30190.m011323
I
0.706
cassava42971.valid.m1
Manihot esculenta
cassava42971.valid.m1
I
0.706
cassava4486.m1
Manihot esculenta
cassava4486.m1
I
0.706
Cucsa.126860
Cucumis sativus
Cucsa.126860
I
0.706
mgf023367m
Mimulus guttatus
mgf023367m
I
0.706
Ciclev10016982m.g
Citrus clementina
Ciclev10016982m.g
I
0.706
evm.TU.supercontig_27.18
Carica papaya
evm.TU.supercontig_27.18
I
0.706
Gorai.011G029700
Gossypium raimondii
Gorai.011G029700
I
0.706
orange1.1g030994m.g
Citrus sinensis
orange1.1g030994m.g
I
0.706
SapurV1A.0012s0570
Salix purpurea
SapurV1A.0012s0570
I
0.706
SapurV1A.0032s0450
Salix purpurea
SapurV1A.0032s0450
I
0.706
PK17878.1
Cannabis sativa
PK17878.1
D
0.706
chr6.CM0114.130.nc
Lotus japonicus
chr6.CM0114.130.nc
I
0.706
POPTR_0005s24110
Populus trichocarpa
POPTR_0005s24110
I
0.705
gene29735-v1.0-hybrid
Fragaria vesca
gene29735-v1.0-hybrid
I
0.705
BRADI2G52380
Brachypodium distachyon
BRADI2G52380
I
0.704
Si003053m.g
Setaria italica
Si003053m.g
I
0.704
TRAES3BF075600040CFD_g
Triticum aestivum
TRAES3BF075600040CFD_g
I
0.704
MLOC_66843
Hordeum vulgare
MLOC_66843
I
0.703
SELMODRAFT_430375
Selaginella moellendorffii
SELMODRAFT_430375
I
0.703
SELMODRAFT_443461
Selaginella moellendorffii
SELMODRAFT_443461
I
0.703
BRADI2G21067
Brachypodium distachyon
BRADI2G21067
I
0.702
MDP0000457509
Malus domestica
MDP0000457509
I
0.700
Bostr.19424s0625
Boechera stricta
Bostr.19424s0625
I
0.699
Bo3g074840
Brassica oleracea
Bo3g074840
I
0.698
Bra001784
Brassica rapa
Bra001784
I
0.698
ERF12
Arabidopsis thaliana
AT1G28360
I
0.697
Bo3g143340
Brassica oleracea
Bo3g143340
I
0.697
Bo5g055840
Brassica oleracea
Bo5g055840
I
0.697
Bo7g048190
Brassica oleracea
Bo7g048190
I
0.697
Bra010881
Brassica rapa
Bra010881
I
0.697
Bra030094
Brassica rapa
Bra030094
I
0.697
Bra032898
Brassica rapa
Bra032898
I
0.697
ERF12
Arabidopsis lyrata
fgenesh2_kg.1__3004__AT1G28360.1
I
0.697
Bostr.15697s0156
Boechera stricta
Bostr.15697s0156
I
0.697
Cagra.1822s0023
Capsella grandiflora
Cagra.1822s0023
I
0.697
Carubv10011585m.g
Capsella rubella
Carubv10011585m.g
I
0.697
Thhalv10009947m.g
Eutrema salsugineum
Thhalv10009947m.g
I
0.697
fgenesh1_pg.scaffold_6000034
Physcomitrella patens
fgenesh1_pg.scaffold_6000034
I
0.696
Ca_20544
Cicer arietinum
Ca_20544
I
0.695
cassava6588.valid.m1
Manihot esculenta
cassava6588.valid.m1
I
0.695
ATERF-7
Arabidopsis lyrata
fgenesh2_kg.3__2255__AT3G20310.1
I
0.692
e_gw1.5.258.1
Physcomitrella patens
e_gw1.5.258.1
I
0.692
gw1.105.71.1
Physcomitrella patens
gw1.105.71.1
I
0.691
Bostr.26675s0388
Boechera stricta
Bostr.26675s0388
I
0.691
Pavir.Ea03148
Panicum virgatum
Pavir.Ea03148
I
0.691
SELMODRAFT_19889
Selaginella moellendorffii
SELMODRAFT_19889
I
0.690
SELMODRAFT_59974
Selaginella moellendorffii
SELMODRAFT_59974
I
0.690
MDP0000236605
Malus domestica
MDP0000236605
I
0.690
MDP0000310904
Malus domestica
MDP0000310904
I
0.690
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.689
AMTR_s00077p00176570
Amborella trichopoda
AMTR_s00077p00176570
I
0.688
GRMZM2G020150
Zea mays
GRMZM2G020150
I
0.688
Lus10035076.g
Linum usitatissimum
Lus10035076.g
I
0.687
GRMZM2G174347
Zea mays
GRMZM2G174347
I
0.686
SELMODRAFT_402810
Selaginella moellendorffii
SELMODRAFT_402810
I
0.684
SELMODRAFT_439762
Selaginella moellendorffii
SELMODRAFT_439762
I
0.684
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.683
Gorai.004G032500
Gossypium raimondii
Gorai.004G032500
I
0.683
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.682
Lus10017907.g
Linum usitatissimum
Lus10017907.g
I
0.682
PK23186.1
Cannabis sativa
PK23186.1
I
0.682
ERF4
Arabidopsis thaliana
AT3G15210
D
0.681
Bo2g122260
Brassica oleracea
Bo2g122260
I
0.681
Bo5g109800
Brassica oleracea
Bo5g109800
I
0.681
Bra035792
Brassica rapa
Bra035792
I
0.681
Bra036016
Brassica rapa
Bra036016
I
0.681
GLYMA06G35710
Glycine max
GLYMA06G35710
I
0.681
GLYMA12G35550
Glycine max
GLYMA12G35550
I
0.681
GLYMA13G34920
Glycine max
GLYMA13G34920
I
0.681
ATERF-4
Arabidopsis lyrata
scaffold_301765.1
I
0.681
Eucgr.F01164
Eucalyptus grandis
Eucgr.F01164
I
0.681
Eucgr.K00734
Eucalyptus grandis
Eucgr.K00734
I
0.681
Pavir.Fa01730
Panicum virgatum
Pavir.Fa01730
I
0.681
Pavir.Fb00952
Panicum virgatum
Pavir.Fb00952
I
0.681
Pavir.Fb01486
Panicum virgatum
Pavir.Fb01486
I
0.681
SapurV1A.1244s0010
Salix purpurea
SapurV1A.1244s0010
I
0.681
ERF13
Arabidopsis thaliana
AT2G44840
D
0.679
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.679
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.679
Bra004873
Brassica rapa
Bra004873
I
0.679
Bra037630
Brassica rapa
Bra037630
I
0.679
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.679
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.679
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.679
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.679
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.679
Si036615m.g
Setaria italica
Si036615m.g
I
0.678
F775_20810
Aegilops tauschii
F775_20810
I
0.677
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.677
e_gw1.487.2.1
Physcomitrella patens
e_gw1.487.2.1
I
0.677