Solyc12g005960.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc12g005960.1 T005545_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.684 0.820
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.684 0.820
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.684 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g005960.1.1 AP2 25 76

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I 0.873
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.873
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.710
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.699
Bra021594 Brassica rapa Bra021594 I 0.694
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.694
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.694
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.691
Bo1g129710 Brassica oleracea Bo1g129710 I 0.688
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.688
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.688
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.688
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.687
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.686
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.685
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.685
ERF4 Arabidopsis thaliana AT3G15210 D 0.684
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.684
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.684
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.684
Pm013734 Prunus mume Pm013734 I 0.684
MDP0000264187 Malus domestica MDP0000264187 I 0.684
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.683
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.683
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.682
Bo2g122260 Brassica oleracea Bo2g122260 I 0.681
Bra036016 Brassica rapa Bra036016 I 0.681
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.681
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.681
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.681
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.681
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.681
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.680
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.680
Solyc04g051360.2 Solanum lycopersicum Solyc04g051360.2 I 0.680
TCM_027348 Theobroma cacao TCM_027348 I 0.680
27446.m000475 Ricinus communis 27446.m000475 I 0.680
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.680
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.680
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.679
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.678
Ca_20041 Cicer arietinum Ca_20041 I 0.678
mgf023662m Mimulus guttatus mgf023662m I 0.678
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.678
Cla015583 Citrullus lanatus Cla015583 I 0.677
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.677