TCM_005425 (Theobroma cacao)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 TCM_005425 T005576_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.724 0.745
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.724 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX96090 AP2 30 81

Links

Other AP2 family TFs
Other Theobroma cacao TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.822
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.822
Pm008788 Prunus mume Pm008788 I 0.822
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.822
mgf018851m Mimulus guttatus mgf018851m I 0.822
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.822
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.822
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.822
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.822
MDP0000133476 Malus domestica MDP0000133476 I 0.822
MDP0000138669 Malus domestica MDP0000138669 I 0.822
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.822
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.822
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.819
30174.m008961 Ricinus communis 30174.m008961 I 0.818
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.815
Si032213m.g Setaria italica Si032213m.g I 0.812
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.812
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.806
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.806
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.806
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.806
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.804
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.802
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.802
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.802
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.800
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.800
Cla021590 Citrullus lanatus Cla021590 I 0.795
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.795
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.795
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.790
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.790
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.790
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.790
Ca_16397 Cicer arietinum Ca_16397 I 0.790
PK25269.1 Cannabis sativa PK25269.1 I 0.778
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.775
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.775
OB09G23520 Oryza brachyantha OB09G23520 I 0.768
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.761
Si027288m.g Setaria italica Si027288m.g I 0.755
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.752
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.750
TCM_011632 Theobroma cacao TCM_011632 I 0.749
TCM_015579 Theobroma cacao TCM_015579 I 0.749
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.749
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.749
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.749
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.749
30068.m002623 Ricinus communis 30068.m002623 I 0.747
29813.m001543 Ricinus communis 29813.m001543 I 0.746
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.746
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.746
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.746
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.745
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.745
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.745
Si024417m.g Setaria italica Si024417m.g I 0.745
Cla010474 Citrullus lanatus Cla010474 I 0.745
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.745
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.745
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.745
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.745
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.745
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.745
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.745
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.745
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.744
F775_02727 Aegilops tauschii F775_02727 I 0.744
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.744
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.744
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.744
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.744
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.744
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.744
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.744
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.744
OBART12G17080 Oryza barthii OBART12G17080 I 0.744
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.744
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.744
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.744
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.744
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.744
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.744
OS12G0582900 Oryza sativa OS12G0582900 I 0.744
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.744
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.744
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.744
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.744
Si038848m.g Setaria italica Si038848m.g I 0.744
TCM_018659 Theobroma cacao TCM_018659 I 0.744
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.744
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.744
Ca_10494 Cicer arietinum Ca_10494 I 0.744
Ca_25424 Cicer arietinum Ca_25424 I 0.744
Pm015931 Prunus mume Pm015931 I 0.744
29635.m000461 Ricinus communis 29635.m000461 I 0.744
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.744
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.744
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.744
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.744
MDP0000276536 Malus domestica MDP0000276536 I 0.744
MDP0000551969 Malus domestica MDP0000551969 I 0.744
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.744
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.744
PK13330.1 Cannabis sativa PK13330.1 I 0.744
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.742
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.742
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.741
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.740
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.740
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.740
30174.m009031 Ricinus communis 30174.m009031 I 0.739
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.738
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.737
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.737
Ca_00417 Cicer arietinum Ca_00417 I 0.736
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.734
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.734
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.734
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N 0.733
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.733
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.731
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.730
Pm030235 Prunus mume Pm030235 I 0.730
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.730
MDP0000157628 Malus domestica MDP0000157628 I 0.730
MDP0000197375 Malus domestica MDP0000197375 I 0.730
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.728
TCM_014471 Theobroma cacao TCM_014471 I 0.728
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.727
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.726
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.725
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.724
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.724
Bo2g018360 Brassica oleracea Bo2g018360 I 0.724
Bo3g013830 Brassica oleracea Bo3g013830 I 0.724
Bo9g152440 Brassica oleracea Bo9g152440 I 0.724
Bra002262 Brassica rapa Bra002262 I 0.724
Bra006518 Brassica rapa Bra006518 I 0.724
Bra020063 Brassica rapa Bra020063 I 0.724
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.724
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.724
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.724
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.724
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.724
OB07G15030 Oryza brachyantha OB07G15030 I 0.724
OBART07G06690 Oryza barthii OBART07G06690 I 0.724
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.724
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.724
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.724
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.724
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.724
OS07G0204000 Oryza sativa OS07G0204000 I 0.724
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.724
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.724
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.724
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.724
TCM_025913 Theobroma cacao TCM_025913 I 0.724
TCM_040015 Theobroma cacao TCM_040015 I 0.724
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.724
Ca_08232 Cicer arietinum Ca_08232 I 0.724
Pm025326 Prunus mume Pm025326 I 0.724
30084.m000185 Ricinus communis 30084.m000185 I 0.724
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.724
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.724
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.724
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.724
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.724
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.724
MDP0000177547 Malus domestica MDP0000177547 I 0.724
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.724
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.724
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.724
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.723
Si033237m.g Setaria italica Si033237m.g I 0.723
MDP0000127123 Malus domestica MDP0000127123 N 0.723
Cla005054 Citrullus lanatus Cla005054 N 0.722
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.722
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.722
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.722
mgf022665m Mimulus guttatus mgf022665m I 0.721
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.720
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.720
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.719
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.719
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.719
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.719
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.718
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.717
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.716
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.716
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.716
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.716
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.714
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.713
Pm000004 Prunus mume Pm000004 I 0.713
MDP0000525933 Malus domestica MDP0000525933 I 0.713
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.712
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.711
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.711
Cla012318 Citrullus lanatus Cla012318 I 0.711
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.711
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.711
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.710
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.710
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.710
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.710
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.710
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.710
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.708
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.708
MDP0000316843 Malus domestica MDP0000316843 N 0.707
PK28640.1 Cannabis sativa PK28640.1 I 0.707
F775_04303 Aegilops tauschii F775_04303 I 0.705
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.705
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.705
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.704
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.700
mgf022810m Mimulus guttatus mgf022810m I 0.700
mgf023693m Mimulus guttatus mgf023693m I 0.700
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.699
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.699
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.698
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.697
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.697
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.697
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.697
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.694
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.694
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.694
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.693
mgf024137m Mimulus guttatus mgf024137m N 0.691
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.690
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.687
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.687
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.684
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.684
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.683
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.683
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.683
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.682
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.681
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.680
Si030686m.g Setaria italica Si030686m.g I 0.680
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.680
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.680
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.679
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.679
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.678
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.677