CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_011811
(
Theobroma cacao
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
TCM_011811
T005590_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.788
0.900
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.788
0.900
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.788
0.900
ERF119
M01093_2.00
Arabidopsis thaliana
NNNGCCGNN
NNCGGCNNN
PBM
Lambert et al.(2019)
pTH11551
0.695
0.740
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY02073
AP2
122
173
KKPVGVRQRKWGKWAAEIRHPLKKTRIWLGTYDTLEEAAKAYDAKKLEFDAL
EOY02074
AP2
122
173
KKPVGVRQRKWGKWAAEIRHPLKKTRIWLGTYDTLEEAAKAYDAKKLEFDAL
Links
Other
AP2
family TFs
Other
Theobroma cacao
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ERF119
Arabidopsis thaliana
AT3G25890
D
0.695
ERF118
Arabidopsis thaliana
AT1G68550
D
0.788
Cucsa.256230
Cucumis sativus
Cucsa.256230
I
0.682
LjSGA_132504.1
Lotus japonicus
LjSGA_132504.1
I
0.677
Bostr.0556s0264
Boechera stricta
Bostr.0556s0264
I
0.700
Bostr.26959s0035
Boechera stricta
Bostr.26959s0035
I
0.753
Cagra.3364s0010
Capsella grandiflora
Cagra.3364s0010
I
0.759
Cagra.6197s0021
Capsella grandiflora
Cagra.6197s0021
I
0.719
Carubv10017565m.g
Capsella rubella
Carubv10017565m.g
I
0.715
Carubv10021988m.g
Capsella rubella
Carubv10021988m.g
I
0.759
evm.TU.supercontig_1.178
Carica papaya
evm.TU.supercontig_1.178
I
0.767
Gorai.008G183300
Gossypium raimondii
Gorai.008G183300
I
0.849
Lus10021678.g
Linum usitatissimum
Lus10021678.g
I
0.687
Lus10034316.g
Linum usitatissimum
Lus10034316.g
I
0.677
SapurV1A.0078s0470
Salix purpurea
SapurV1A.0078s0470
I
0.730
SapurV1A.0079s0190
Salix purpurea
SapurV1A.0079s0190
I
0.714
Thhalv10004526m.g
Eutrema salsugineum
Thhalv10004526m.g
I
0.706
Thhalv10019722m.g
Eutrema salsugineum
Thhalv10019722m.g
I
0.699
chr6.LjT13N05.60.nc
Lotus japonicus
chr6.LjT13N05.60.nc
I
0.677
LjSGA_016572.1
Lotus japonicus
LjSGA_016572.1
I
0.677
cassava35758.valid.m1
Manihot esculenta
cassava35758.valid.m1
I
0.714
Bo2g138790
Brassica oleracea
Bo2g138790
I
0.702
Bo7g082250
Brassica oleracea
Bo7g082250
I
0.705
Bra025170
Brassica rapa
Bra025170
I
0.705
Bra036360
Brassica rapa
Bra036360
I
0.720
fgenesh2_kg.2__1107__AT1G68550.2
Arabidopsis lyrata
fgenesh2_kg.2__1107__AT1G68550.2
I
0.766
GLYMA08G15830
Glycine max
GLYMA08G15830
I
0.691
GLYMA10G42130
Glycine max
GLYMA10G42130
I
0.692
GLYMA20G24920
Glycine max
GLYMA20G24920
I
0.695
POPTR_0008s11900
Populus trichocarpa
POPTR_0008s11900
I
0.714
POPTR_0010s13540
Populus trichocarpa
POPTR_0010s13540
I
0.730
scaffold_500470.1
Arabidopsis lyrata
scaffold_500470.1
I
0.720
VIT_01s0011g03470
Vitis vinifera
VIT_01s0011g03470
I
0.689
Cla021763
Citrullus lanatus
Cla021763
I
0.681
27524.m000298
Ricinus communis
27524.m000298
I
0.714
cassava35757.valid.m1
Manihot esculenta
cassava35757.valid.m1
I
0.714
cassava43300.valid.m1
Manihot esculenta
cassava43300.valid.m1
I
0.714
Gorai.013G076100
Gossypium raimondii
Gorai.013G076100
N
0.729