CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla005423
(
Citrullus lanatus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cla005423
T006422_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR
YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.718
0.851
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.718
0.851
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.718
0.851
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.705
0.809
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.705
0.809
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.705
0.809
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.690
0.702
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.690
0.702
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.690
0.702
OS05G0497200
M01636_2.00
Oryza sativa
CGSCGCCR
YGGCGSCG
PBM
Weirauch et al.(2014)
pTH8640
0.686
0.745
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.684
0.787
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla005423
AP2
24
75
RRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGP
Links
Other
AP2
family TFs
Other
Citrullus lanatus
TFs
214 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29640.m000403
Ricinus communis
29640.m000403
I
0.783
30174.m008755
Ricinus communis
30174.m008755
I
0.682
30174.m008756
Ricinus communis
30174.m008756
I
0.679
30174.m008759
Ricinus communis
30174.m008759
I
0.689
30190.m011323
Ricinus communis
30190.m011323
I
0.684
AMTR_s00002p00264660
Amborella trichopoda
AMTR_s00002p00264660
I
0.695
Aquca_017_00628
Aquilegia coerulea
Aquca_017_00628
I
0.690
Aquca_027_00311
Aquilegia coerulea
Aquca_027_00311
I
0.758
Aquca_036_00073
Aquilegia coerulea
Aquca_036_00073
I
0.695
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.690
BGIOSGA017797
Oryza indica
BGIOSGA017797
I
0.686
Bo1g102220
Brassica oleracea
Bo1g102220
I
0.682
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.690
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.690
Bo6g022410
Brassica oleracea
Bo6g022410
I
0.741
Bo7g040810
Brassica oleracea
Bo7g040810
I
0.685
Bostr.26675s0113
Boechera stricta
Bostr.26675s0113
I
0.704
Bra004873
Brassica rapa
Bra004873
I
0.690
Bra014925
Brassica rapa
Bra014925
I
0.685
Bra018864
Brassica rapa
Bra018864
I
0.700
Bra023748
Brassica rapa
Bra023748
I
0.682
Bra037630
Brassica rapa
Bra037630
I
0.690
BRADI2G21067
Brachypodium distachyon
BRADI2G21067
I
0.726
BRADI2G52380
Brachypodium distachyon
BRADI2G52380
I
0.680
BRADI3G06562
Brachypodium distachyon
BRADI3G06562
I
0.710
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.690
Cagra.0952s0001
Capsella grandiflora
Cagra.0952s0001
I
0.721
Carubv10010284m.g
Capsella rubella
Carubv10010284m.g
I
0.721
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.690
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.683
cassava34729.m1
Manihot esculenta
cassava34729.m1
I
0.711
cassava42971.valid.m1
Manihot esculenta
cassava42971.valid.m1
I
0.684
cassava43266.valid.m1
Manihot esculenta
cassava43266.valid.m1
I
0.747
cassava4486.m1
Manihot esculenta
cassava4486.m1
I
0.684
cassava6588.valid.m1
Manihot esculenta
cassava6588.valid.m1
I
0.707
Ca_00326
Cicer arietinum
Ca_00326
I
0.684
Ca_12080
Cicer arietinum
Ca_12080
I
0.678
Ca_12205
Cicer arietinum
Ca_12205
I
0.699
Ca_17824
Cicer arietinum
Ca_17824
I
0.702
chr1.CM0375.170.nd
Lotus japonicus
chr1.CM0375.170.nd
I
0.714
chr2.LjT24P12.30.nd
Lotus japonicus
chr2.LjT24P12.30.nd
I
0.746
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.701
chr6.CM0114.130.nc
Lotus japonicus
chr6.CM0114.130.nc
I
0.684
Ciclev10009361m.g
Citrus clementina
Ciclev10009361m.g
I
0.778
Ciclev10016668m.g
Citrus clementina
Ciclev10016668m.g
I
0.768
Ciclev10016982m.g
Citrus clementina
Ciclev10016982m.g
I
0.684
Cla003319
Citrullus lanatus
Cla003319
I
0.777
Cla013723
Citrullus lanatus
Cla013723
I
0.732
Cla020002
Citrullus lanatus
Cla020002
I
0.684
Cucsa.042770
Cucumis sativus
Cucsa.042770
I
0.802
Cucsa.126860
Cucumis sativus
Cucsa.126860
I
0.684
Cucsa.129330
Cucumis sativus
Cucsa.129330
I
0.679
Cucsa.139820
Cucumis sativus
Cucsa.139820
I
0.742
Cucsa.190200
Cucumis sativus
Cucsa.190200
I
0.777
Cucsa.255330
Cucumis sativus
Cucsa.255330
I
0.689
ERF12
Vitis vinifera
VIT_10s0003g00130
I
0.684
ERF13
Arabidopsis thaliana
AT2G44840
D
0.690
ERF3
Arabidopsis thaliana
AT1G50640
D
0.718
ERF3
Arabidopsis lyrata
fgenesh2_kg.1__4150__AT1G50640.1
I
0.704
ERF7
Arabidopsis thaliana
AT3G20310
D
0.705
estExt_gwp_gw1.C_1270048
Physcomitrella patens
estExt_gwp_gw1.C_1270048
I
0.692
Eucgr.A01091
Eucalyptus grandis
Eucgr.A01091
I
0.758
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.694
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.678
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.678
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.680
evm.TU.supercontig_12.251
Carica papaya
evm.TU.supercontig_12.251
I
0.768
evm.TU.supercontig_132.31
Carica papaya
evm.TU.supercontig_132.31
I
0.756
evm.TU.supercontig_27.18
Carica papaya
evm.TU.supercontig_27.18
I
0.684
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.698
e_gw1.124.59.1
Physcomitrella patens
e_gw1.124.59.1
I
0.692
e_gw1.487.2.1
Physcomitrella patens
e_gw1.487.2.1
I
0.690
fgenesh2_kg.3__2537__AT3G23220.1
Arabidopsis lyrata
fgenesh2_kg.3__2537__AT3G23220.1
I
0.690
gene01152-v1.0-hybrid
Fragaria vesca
gene01152-v1.0-hybrid
I
0.769
gene03450-v1.0-hybrid
Fragaria vesca
gene03450-v1.0-hybrid
I
0.691
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.691
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.685
gene21403-v1.0-hybrid
Fragaria vesca
gene21403-v1.0-hybrid
I
0.693
gene29735-v1.0-hybrid
Fragaria vesca
gene29735-v1.0-hybrid
I
0.683
GLYMA02G43500
Glycine max
GLYMA02G43500
I
0.748
GLYMA02G46340
Glycine max
GLYMA02G46340
I
0.725
GLYMA03G31640
Glycine max
GLYMA03G31640
I
0.708
GLYMA06G44430
Glycine max
GLYMA06G44430
I
0.682
GLYMA12G13315
Glycine max
GLYMA12G13315
I
0.680
GLYMA13G31010
Glycine max
GLYMA13G31010
I
0.684
GLYMA14G02360
Glycine max
GLYMA14G02360
I
0.708
GLYMA14G05470
Glycine max
GLYMA14G05470
I
0.748
GLYMA15G08360
Glycine max
GLYMA15G08360
I
0.684
Gorai.001G252400
Gossypium raimondii
Gorai.001G252400
I
0.677
Gorai.002G092900
Gossypium raimondii
Gorai.002G092900
I
0.728
Gorai.004G032500
Gossypium raimondii
Gorai.004G032500
I
0.705
Gorai.007G312200
Gossypium raimondii
Gorai.007G312200
I
0.720
Gorai.009G443400
Gossypium raimondii
Gorai.009G443400
I
0.742
Gorai.011G029700
Gossypium raimondii
Gorai.011G029700
I
0.684
Gorai.013G169500
Gossypium raimondii
Gorai.013G169500
I
0.683
GRMZM2G020016
Zea mays
GRMZM2G020016
I
0.688
GRMZM2G079653
Zea mays
GRMZM2G079653
I
0.709
GRMZM2G146028
Zea mays
GRMZM2G146028
I
0.710
GSMUA_Achr1G18230_001
Musa acuminata
GSMUA_Achr1G18230_001
I
0.790
GSMUA_Achr3G13010_001
Musa acuminata
GSMUA_Achr3G13010_001
I
0.734
GSMUA_Achr3G29290_001
Musa acuminata
GSMUA_Achr3G29290_001
I
0.702
GSMUA_Achr4G04060_001
Musa acuminata
GSMUA_Achr4G04060_001
I
0.763
GSMUA_Achr4G06170_001
Musa acuminata
GSMUA_Achr4G06170_001
I
0.765
GSMUA_Achr4G06660_001
Musa acuminata
GSMUA_Achr4G06660_001
I
0.702
GSMUA_Achr4G11430_001
Musa acuminata
GSMUA_Achr4G11430_001
I
0.779
GSMUA_Achr5G09940_001
Musa acuminata
GSMUA_Achr5G09940_001
I
0.702
GSMUA_Achr6G00240_001
Musa acuminata
GSMUA_Achr6G00240_001
I
0.684
GSMUA_Achr6G01440_001
Musa acuminata
GSMUA_Achr6G01440_001
I
0.690
GSMUA_AchrUn_randomG06910_001
Musa acuminata
GSMUA_AchrUn_randomG06910_001
I
0.714
gw1.90.191.1
Physcomitrella patens
gw1.90.191.1
I
0.694
LPERR02G05920
Leersia perrieri
LPERR02G05920
I
0.711
LPERR05G17470
Leersia perrieri
LPERR05G17470
I
0.686
Lus10016212.g
Linum usitatissimum
Lus10016212.g
I
0.684
Lus10029987.g
Linum usitatissimum
Lus10029987.g
I
0.738
Lus10031526.g
Linum usitatissimum
Lus10031526.g
I
0.756
Lus10035329.g
Linum usitatissimum
Lus10035329.g
I
0.738
Lus10043182.g
Linum usitatissimum
Lus10043182.g
I
0.688
MDP0000236605
Malus domestica
MDP0000236605
I
0.708
MDP0000243113
Malus domestica
MDP0000243113
I
0.741
MDP0000310904
Malus domestica
MDP0000310904
I
0.708
MDP0000457509
Malus domestica
MDP0000457509
I
0.718
MDP0000542633
Malus domestica
MDP0000542633
I
0.763
MDP0000629527
Malus domestica
MDP0000629527
I
0.763
MDP0000744693
Malus domestica
MDP0000744693
I
0.741
MDP0000839828
Malus domestica
MDP0000839828
I
0.769
mgf007166m
Mimulus guttatus
mgf007166m
I
0.768
mgf016282m
Mimulus guttatus
mgf016282m
I
0.769
mgf023367m
Mimulus guttatus
mgf023367m
I
0.684
MLOC_66843
Hordeum vulgare
MLOC_66843
I
0.679
MTR_1g074310
Medicago truncatula
MTR_1g074310
I
0.681
MTR_2g014300
Medicago truncatula
MTR_2g014300
I
0.684
MTR_5g085070
Medicago truncatula
MTR_5g085070
I
0.683
MTR_5g085100
Medicago truncatula
MTR_5g085100
I
0.699
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.689
OGLUM02G06860
Oryza glumaepatula
OGLUM02G06860
I
0.702
OGLUM05G22780
Oryza glumaepatula
OGLUM05G22780
I
0.686
OMERI02G07840
Oryza meridionalis
OMERI02G07840
I
0.702
OMERI05G19480
Oryza meridionalis
OMERI05G19480
I
0.686
ONIVA05G22260
Oryza nivara
ONIVA05G22260
I
0.686
OPUNC02G05940
Oryza punctata
OPUNC02G05940
I
0.711
OPUNC05G19220
Oryza punctata
OPUNC05G19220
I
0.686
orange1.1g027990m.g
Citrus sinensis
orange1.1g027990m.g
I
0.768
orange1.1g030994m.g
Citrus sinensis
orange1.1g030994m.g
I
0.684
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.681
orange1.1g045783m.g
Citrus sinensis
orange1.1g045783m.g
I
0.778
ORGLA02G0063000
Oryza glaberrima
ORGLA02G0063000
I
0.702
ORGLA05G0187500
Oryza glaberrima
ORGLA05G0187500
I
0.686
ORUFI02G06880
Oryza rufipogon
ORUFI02G06880
I
0.702
ORUFI05G22840
Oryza rufipogon
ORUFI05G22840
I
0.686
OS05G0497200
Oryza sativa
OS05G0497200
D
0.686
Pavir.Aa03102
Panicum virgatum
Pavir.Aa03102
I
0.710
Pavir.Ab00660
Panicum virgatum
Pavir.Ab00660
I
0.710
Pavir.Da00220
Panicum virgatum
Pavir.Da00220
I
0.683
Pavir.Eb03165
Panicum virgatum
Pavir.Eb03165
I
0.698
PGSC0003DMG400000681
Solanum tuberosum
PGSC0003DMG400000681
I
0.718
PGSC0003DMG400014417
Solanum tuberosum
PGSC0003DMG400014417
I
0.779
PGSC0003DMG400022305
Solanum tuberosum
PGSC0003DMG400022305
I
0.783
PGSC0003DMG400029713
Solanum tuberosum
PGSC0003DMG400029713
I
0.684
PK02998.1
Cannabis sativa
PK02998.1
I
0.704
PK17878.1
Cannabis sativa
PK17878.1
D
0.684
PK23186.1
Cannabis sativa
PK23186.1
I
0.695
PK25211.1
Cannabis sativa
PK25211.1
I
0.778
Pm010083
Prunus mume
Pm010083
I
0.684
Pm011907
Prunus mume
Pm011907
I
0.763
Pm014953
Prunus mume
Pm014953
I
0.769
Pm017696
Prunus mume
Pm017696
I
0.683
Pm017699
Prunus mume
Pm017699
I
0.679
Pm020210
Prunus mume
Pm020210
I
0.693
POPTR_0001s36610
Populus trichocarpa
POPTR_0001s36610
I
0.770
POPTR_0002s04430
Populus trichocarpa
POPTR_0002s04430
I
0.695
POPTR_0004s04700
Populus trichocarpa
POPTR_0004s04700
I
0.684
POPTR_0005s24110
Populus trichocarpa
POPTR_0005s24110
I
0.683
POPTR_0011s05570
Populus trichocarpa
POPTR_0011s05570
I
0.684
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.684
PRUPE_ppa010804mg
Prunus persica
PRUPE_ppa010804mg
I
0.769
PRUPE_ppa010893mg
Prunus persica
PRUPE_ppa010893mg
I
0.763
PRUPE_ppa012385mg
Prunus persica
PRUPE_ppa012385mg
I
0.684
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.683
PRUPE_ppa022435mg
Prunus persica
PRUPE_ppa022435mg
I
0.693
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.683
SapurV1A.0007s0970
Salix purpurea
SapurV1A.0007s0970
I
0.680
SapurV1A.0012s0570
Salix purpurea
SapurV1A.0012s0570
I
0.684
SapurV1A.0032s0450
Salix purpurea
SapurV1A.0032s0450
I
0.684
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.682
SapurV1A.0126s0320
Salix purpurea
SapurV1A.0126s0320
I
0.764
SapurV1A.0126s0330
Salix purpurea
SapurV1A.0126s0330
I
0.764
Sb03g037085
Sorghum bicolor
Sb03g037085
I
0.698
Sb04g006080
Sorghum bicolor
Sb04g006080
I
0.710
SELMODRAFT_430375
Selaginella moellendorffii
SELMODRAFT_430375
I
0.693
SELMODRAFT_443461
Selaginella moellendorffii
SELMODRAFT_443461
I
0.693
SELMODRAFT_49950
Selaginella moellendorffii
SELMODRAFT_49950
I
0.704
SELMODRAFT_72880
Selaginella moellendorffii
SELMODRAFT_72880
I
0.682
SELMODRAFT_73142
Selaginella moellendorffii
SELMODRAFT_73142
I
0.704
SELMODRAFT_73144
Selaginella moellendorffii
SELMODRAFT_73144
I
0.682
Si003053m.g
Setaria italica
Si003053m.g
I
0.680
Solyc02g077840.1
Solanum lycopersicum
Solyc02g077840.1
I
0.684
Solyc07g049490.1
Solanum lycopersicum
Solyc07g049490.1
I
0.710
Solyc07g064890.1
Solanum lycopersicum
Solyc07g064890.1
I
0.779
Solyc10g006130.1
Solanum lycopersicum
Solyc10g006130.1
I
0.775
TCM_005706
Theobroma cacao
TCM_005706
I
0.680
TCM_005707
Theobroma cacao
TCM_005707
I
0.683
TCM_029823
Theobroma cacao
TCM_029823
I
0.684
TCM_030804
Theobroma cacao
TCM_030804
I
0.715
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.690
Thhalv10011689m.g
Eutrema salsugineum
Thhalv10011689m.g
I
0.714
Thhalv10021393m.g
Eutrema salsugineum
Thhalv10021393m.g
I
0.715
Thhalv10022108m.g
Eutrema salsugineum
Thhalv10022108m.g
I
0.684
TRAES3BF075600040CFD_g
Triticum aestivum
TRAES3BF075600040CFD_g
I
0.680
Traes_5BL_FBC7AF288
Triticum aestivum
Traes_5BL_FBC7AF288
I
0.685
VIT_05s0049g00500
Vitis vinifera
VIT_05s0049g00500
I
0.677
VIT_07s0141g00690
Vitis vinifera
VIT_07s0141g00690
I
0.703
VIT_12s0059g01460
Vitis vinifera
VIT_12s0059g01460
I
0.768
VIT_14s0081g00520
Vitis vinifera
VIT_14s0081g00520
I
0.704
VIT_19s0090g01080
Vitis vinifera
VIT_19s0090g01080
I
0.734