CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30128.m008556
(
Ricinus communis
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
30128.m008556
T006747_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.812
0.940
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.806
0.820
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.799
0.800
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.779
0.860
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.779
0.860
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.779
0.860
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.768
0.760
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.768
0.760
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.759
0.900
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.759
0.900
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.757
0.760
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.757
0.760
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.757
0.760
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN
NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.746
0.740
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.737
0.720
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.737
0.720
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.737
0.720
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.726
0.760
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.722
0.720
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.722
0.720
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.722
0.720
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.718
0.720
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.710
0.700
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.710
0.720
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD
HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.710
0.720
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM
KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.709
0.740
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.709
0.740
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.709
0.740
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.706
0.700
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.706
0.700
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.706
0.700
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.706
0.720
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH
DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.705
0.780
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.705
0.780
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.705
0.780
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY
RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.705
0.780
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.703
0.720
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.700
0.700
O65242_TOBAC
M09730_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.696
0.680
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.695
0.720
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.690
0.700
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.690
0.700
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.689
0.660
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.689
0.660
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.687
0.640
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.683
0.640
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.681
0.720
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.679
0.680
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.679
0.680
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.679
0.680
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.677
0.680
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30128.m008556
AP2
55
106
RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGT
Links
Other
AP2
family TFs
Other
Ricinus communis
TFs
1490 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R000877
Calypte anna
Aan_R000877
N
Afo_R012814
Aptenodytes forsteri
Afo_R012814
N
Alligator_sinensis_CCG007468.1
Alligator sinensis
Alligator_sinensis_CCG007468.1
N
Brh_R001899
Buceros rhinoceros
Brh_R001899
N
Cmyd_10014637
Chelonia mydas
Cmyd_10014637
N
ENSAMEG00000008669
Ailuropoda melanoleuca
ENSAMEG00000008669
N
ENSAPLG00000013510
Anas platyrhynchos
ENSAPLG00000013510
N
ENSCPOG00000008291
Cavia porcellus
ENSCPOG00000008291
N
ENSCSAG00000001458
Chlorocebus sabaeus
ENSCSAG00000001458
N
ENSFALG00000001799
Ficedula albicollis
ENSFALG00000001799
N
ENSGALG00000006100
Gallus gallus
ENSGALG00000006100
N
ENSLACG00000012711
Latimeria chalumnae
ENSLACG00000012711
N
ENSLOCG00000004952
Lepisosteus oculatus
ENSLOCG00000004952
N
ENSMEUG00000012033
Macropus eugenii
ENSMEUG00000012033
N
ENSMPUG00000004615
Mustela putorius furo
ENSMPUG00000004615
N
ENSNLEG00000010279
Nomascus leucogenys
ENSNLEG00000010279
N
ENSOARG00000015740
Ovis aries
ENSOARG00000015740
N
ENSOCUG00000005209
Oryctolagus cuniculus
ENSOCUG00000005209
N
ENSP00000359469
Macaca fascicularis
ENSP00000359469
N
ENSP00000378079-D1
Bos grunniens
ENSP00000378079-D1
N
ENSPANG00000004612
Papio anubis
ENSPANG00000004612
N
ENSPPYG00000001164
Pongo abelii
ENSPPYG00000001164
N
ENSPSIG00000002467
Pelodiscus sinensis
ENSPSIG00000002467
N
ENSSHAG00000015751
Sarcophilus harrisii
ENSSHAG00000015751
N
ENSSSCG00000006913
Sus scrofa
ENSSSCG00000006913
N
ENSSTOG00000027631
Ictidomys tridecemlineatus
ENSSTOG00000027631
N
ENSTSYG00000013994
Tarsius syrichta
ENSTSYG00000013994
N
Myotis_brandtii_ZNF644_10006981
Myotis brandtii
Myotis_brandtii_ZNF644_10006981
N
Ogr15854
Ophisaurus gracilis
Ogr15854
N
Pvit_08155
Pogona vitticeps
Pvit_08155
N
Tal_R008696
Tyto alba
Tal_R008696
N
XP_002940150
Xenopus tropicalis
XP_002940150
N
Zfp644
Rattus norvegicus
ENSRNOG00000002112
N
Zfp644
Mus musculus
ENSMUSG00000049606
N
ZNF644
Felis catus
ENSFCAG00000003115
N
ZNF644
Gorilla gorilla
ENSGGOG00000004186
N
ZNF644
Homo sapiens
ENSG00000122482
N
ZNF644
Meleagris gallopavo
ENSMGAG00000008450
N
ZNF644
Microcebus murinus
ENSMICG00000015207
N
ZNF644
Myotis lucifugus
ENSMLUG00000010460
N
ZNF644
Macaca mulatta
ENSMMUG00000007635
N
ZNF644
Monodelphis domestica
ENSMODG00000012054
N
ZNF644
Bos taurus
ENSBTAG00000011200
N
ZNF644
Canis familiaris
ENSCAFG00000020190
N
ZNF644
Choloepus hoffmanni
ENSCHOG00000000270
N
ZNF644
Callithrix jacchus
ENSCJAG00000001855
N
ZNF644
Dasypus novemcinctus
ENSDNOG00000046514
N
ZNF644
Vicugna pacos
ENSVPAG00000006915
N
ZNF644
Tursiops truncatus
ENSTTRG00000009372
N
ZNF644
Ochotona princeps
ENSOPRG00000009207
N
ZNF644
Taeniopygia guttata
ENSTGUG00000006188
N
ZNF644
Tupaia belangeri
ENSTBEG00000012024
N
ZNF644
Sus scrofa
ENSSSCG00000022534
N
ZNF644
Erinaceus europaeus
ENSEEUG00000014978
N
ZNF644
Ornithorhynchus anatinus
ENSOANG00000007039
N
ZNF644
Sorex araneus
ENSSARG00000007387
N
ZNF644
Loxodonta africana
ENSLAFG00000002148
N
ZNF644
Pteropus vampyrus
ENSPVAG00000012470
N
ZNF644
Pan troglodytes
ENSPTRG00000000947
N
ZNF644
Equus caballus
ENSECAG00000010304
N
ZNF644
Anolis carolinensis
ENSACAG00000001608
N
ZNF644
Procavia capensis
ENSPCAG00000013002
N
ZNF644
Otolemur garnettii
ENSOGAG00000000665
N