CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava32974.m1
(
Manihot esculenta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
cassava32974.m1
T006887_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.690
0.889
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.690
0.889
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava32974.m1
AP2
24
69
PVYHGVRKRRWGKWVSKKSRIWLGSFSVPEMAAKAYDVAAYCLKGC
Links
Other
AP2
family TFs
Other
Manihot esculenta
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29742.m001400
Ricinus communis
29742.m001400
I
0.695
Bo5g002600
Brassica oleracea
Bo5g002600
I
0.677
Bostr.5325s0047
Boechera stricta
Bostr.5325s0047
I
0.684
Bra032630
Brassica rapa
Bra032630
I
0.686
Bra033274
Brassica rapa
Bra033274
I
0.677
Cagra.1968s0069
Capsella grandiflora
Cagra.1968s0069
I
0.690
Carubv10010347m.g
Capsella rubella
Carubv10010347m.g
I
0.690
cassava43608.valid.m1
Manihot esculenta
cassava43608.valid.m1
I
0.680
Ca_01325
Cicer arietinum
Ca_01325
I
0.695
Ca_17638
Cicer arietinum
Ca_17638
I
0.688
chr1.LjT43L07.200.nd
Lotus japonicus
chr1.LjT43L07.200.nd
I
0.682
ERF023
Arabidopsis thaliana
AT1G01250
D
0.690
fgenesh2_kg.1__103__AT1G01250.1
Arabidopsis lyrata
fgenesh2_kg.1__103__AT1G01250.1
I
0.690
gene19141-v1.0-hybrid
Fragaria vesca
gene19141-v1.0-hybrid
I
0.682
MTR_7g117690
Medicago truncatula
MTR_7g117690
I
0.678
MTR_8g027465
Medicago truncatula
MTR_8g027465
I
0.701
PK15554.1
Cannabis sativa
PK15554.1
I
0.682
Pm018354
Prunus mume
Pm018354
I
0.682
POPTR_0014s09540
Populus trichocarpa
POPTR_0014s09540
I
0.695
PRUPE_ppa026139mg
Prunus persica
PRUPE_ppa026139mg
I
0.682
SapurV1A.0003s1030
Salix purpurea
SapurV1A.0003s1030
I
0.682
Thhalv10009402m.g
Eutrema salsugineum
Thhalv10009402m.g
I
0.677