CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava45031.m1
(
Manihot esculenta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
cassava45031.m1
T006947_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.783
0.939
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.783
0.939
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.783
0.939
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.721
0.816
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH
DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.692
0.816
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN
NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.679
0.776
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava45031.m1
AP2
39
90
CTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGP
Links
Other
AP2
family TFs
Other
Manihot esculenta
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29680.m001737
Ricinus communis
29680.m001737
I
0.720
29729.m002292
Ricinus communis
29729.m002292
I
0.690
30170.m014115
Ricinus communis
30170.m014115
I
0.805
AMTR_s00022p00250320
Amborella trichopoda
AMTR_s00022p00250320
I
0.679
AMTR_s00039p00088760
Amborella trichopoda
AMTR_s00039p00088760
I
0.687
Aquca_009_00282
Aquilegia coerulea
Aquca_009_00282
I
0.679
Bo2g016490
Brassica oleracea
Bo2g016490
I
0.701
Bo2g083920
Brassica oleracea
Bo2g083920
I
0.774
Bo3g013160
Brassica oleracea
Bo3g013160
I
0.687
Bo6g086320
Brassica oleracea
Bo6g086320
I
0.769
Bo6g119660
Brassica oleracea
Bo6g119660
I
0.783
Bo9g155940
Brassica oleracea
Bo9g155940
I
0.721
Bostr.26527s0367
Boechera stricta
Bostr.26527s0367
I
0.721
Bostr.3288s0201
Boechera stricta
Bostr.3288s0201
I
0.783
Bra002159
Brassica rapa
Bra002159
I
0.721
Bra003752
Brassica rapa
Bra003752
I
0.769
Bra006460
Brassica rapa
Bra006460
I
0.687
Bra008200
Brassica rapa
Bra008200
I
0.774
Bra015840
Brassica rapa
Bra015840
I
0.783
Bra023674
Brassica rapa
Bra023674
I
0.701
Cagra.0712s0008
Capsella grandiflora
Cagra.0712s0008
I
0.717
Cagra.0799s0022
Capsella grandiflora
Cagra.0799s0022
I
0.783
Carubv10002425m.g
Capsella rubella
Carubv10002425m.g
I
0.717
Carubv10020960m.g
Capsella rubella
Carubv10020960m.g
I
0.783
cassava19475.valid.m1
Manihot esculenta
cassava19475.valid.m1
I
0.696
cassava25887.m1
Manihot esculenta
cassava25887.m1
I
0.723
cassava41240.m1
Manihot esculenta
cassava41240.m1
I
0.805
Ca_10770
Cicer arietinum
Ca_10770
I
0.784
chr1.CM0195.510.nd
Lotus japonicus
chr1.CM0195.510.nd
I
0.750
Ciclev10002280m.g
Citrus clementina
Ciclev10002280m.g
I
0.805
Ciclev10022244m.g
Citrus clementina
Ciclev10022244m.g
I
0.697
Cla006713
Citrullus lanatus
Cla006713
I
0.689
Cla021113
Citrullus lanatus
Cla021113
I
0.797
Cla022803
Citrullus lanatus
Cla022803
I
0.743
Cucsa.136780
Cucumis sativus
Cucsa.136780
I
0.690
Cucsa.231820
Cucumis sativus
Cucsa.231820
I
0.743
Cucsa.342750
Cucumis sativus
Cucsa.342750
I
0.797
DREB2C
Arabidopsis lyrata
scaffold_402826.1
I
0.682
DREB2D
Arabidopsis thaliana
AT1G75490
D
0.783
DREB2G
Arabidopsis thaliana
AT5G18450
D
0.721
Eucgr.A02390
Eucalyptus grandis
Eucgr.A02390
I
0.687
Eucgr.F01607
Eucalyptus grandis
Eucgr.F01607
I
0.753
Eucgr.K02952
Eucalyptus grandis
Eucgr.K02952
I
0.715
evm.TU.supercontig_19.121
Carica papaya
evm.TU.supercontig_19.121
I
0.688
evm.TU.supercontig_51.23
Carica papaya
evm.TU.supercontig_51.23
I
0.720
evm.TU.supercontig_99.20
Carica papaya
evm.TU.supercontig_99.20
I
0.805
e_gw1.162.74.1
Physcomitrella patens
e_gw1.162.74.1
I
0.687
fgenesh2_kg.2__1828__AT1G75490.1
Arabidopsis lyrata
fgenesh2_kg.2__1828__AT1G75490.1
I
0.783
gene08479-v1.0-hybrid
Fragaria vesca
gene08479-v1.0-hybrid
I
0.779
gene16710-v1.0-hybrid
Fragaria vesca
gene16710-v1.0-hybrid
I
0.740
GLYMA04G03070
Glycine max
GLYMA04G03070
I
0.784
GLYMA06G03110
Glycine max
GLYMA06G03110
I
0.784
GLYMA14G07620
Glycine max
GLYMA14G07620
I
0.789
GLYMA17G37350
Glycine max
GLYMA17G37350
I
0.789
Gorai.005G110100
Gossypium raimondii
Gorai.005G110100
I
0.797
Gorai.007G271900
Gossypium raimondii
Gorai.007G271900
I
0.730
Gorai.009G197800
Gossypium raimondii
Gorai.009G197800
I
0.797
Gorai.009G271400
Gossypium raimondii
Gorai.009G271400
I
0.760
GRMZM2G028386
Zea mays
GRMZM2G028386
I
0.690
GRMZM2G156737
Zea mays
GRMZM2G156737
I
0.690
GSMUA_Achr11G24820_001
Musa acuminata
GSMUA_Achr11G24820_001
I
0.685
GSMUA_Achr3G00320_001
Musa acuminata
GSMUA_Achr3G00320_001
I
0.703
GSMUA_Achr9G04630_001
Musa acuminata
GSMUA_Achr9G04630_001
I
0.685
GSMUA_AchrUn_randomG08690_001
Musa acuminata
GSMUA_AchrUn_randomG08690_001
I
0.718
GSMUA_AchrUn_randomG14580_001
Musa acuminata
GSMUA_AchrUn_randomG14580_001
I
0.693
gw1.120.55.1
Physcomitrella patens
gw1.120.55.1
I
0.699
LjSGA_063888.1
Lotus japonicus
LjSGA_063888.1
I
0.784
Lus10003581.g
Linum usitatissimum
Lus10003581.g
I
0.683
Lus10006127.g
Linum usitatissimum
Lus10006127.g
I
0.772
Lus10010632.g
Linum usitatissimum
Lus10010632.g
I
0.751
Lus10012226.g
Linum usitatissimum
Lus10012226.g
I
0.696
Lus10023633.g
Linum usitatissimum
Lus10023633.g
I
0.679
Lus10024298.g
Linum usitatissimum
Lus10024298.g
I
0.772
Lus10034902.g
Linum usitatissimum
Lus10034902.g
I
0.679
MDP0000141335
Malus domestica
MDP0000141335
I
0.770
MDP0000153866
Malus domestica
MDP0000153866
I
0.681
MDP0000223609
Malus domestica
MDP0000223609
I
0.701
MDP0000250924
Malus domestica
MDP0000250924
I
0.785
MDP0000250927
Malus domestica
MDP0000250927
I
0.753
MDP0000295902
Malus domestica
MDP0000295902
I
0.770
mgf017629m
Mimulus guttatus
mgf017629m
I
0.731
mgf024545m
Mimulus guttatus
mgf024545m
I
0.803
MTR_1g023170
Medicago truncatula
MTR_1g023170
I
0.784
MTR_3g112440
Medicago truncatula
MTR_3g112440
I
0.714
MTR_5g083340
Medicago truncatula
MTR_5g083340
I
0.695
orange1.1g036655m.g
Citrus sinensis
orange1.1g036655m.g
I
0.805
PDK_20s1493381g003
Phoenix dactylifera
PDK_20s1493381g003
I
0.685
PGSC0003DMG400003706
Solanum tuberosum
PGSC0003DMG400003706
I
0.711
PGSC0003DMG400027117
Solanum tuberosum
PGSC0003DMG400027117
I
0.714
PGSC0003DMG400028700
Solanum tuberosum
PGSC0003DMG400028700
I
0.725
PK07402.1
Cannabis sativa
PK07402.1
D
0.692
PK08602.1
Cannabis sativa
PK08602.1
D
0.679
Pm003634
Prunus mume
Pm003634
I
0.726
Pm006274
Prunus mume
Pm006274
I
0.797
POPTR_0002s03090
Populus trichocarpa
POPTR_0002s03090
I
0.804
POPTR_0005s25470
Populus trichocarpa
POPTR_0005s25470
I
0.804
POPTR_0006s05320
Populus trichocarpa
POPTR_0006s05320
I
0.681
POPTR_0008s07360
Populus trichocarpa
POPTR_0008s07360
I
0.694
POPTR_0010s19100
Populus trichocarpa
POPTR_0010s19100
I
0.704
PRUPE_ppa023248mg
Prunus persica
PRUPE_ppa023248mg
I
0.793
PRUPE_ppa026176mg
Prunus persica
PRUPE_ppa026176mg
I
0.729
SapurV1A.0188s0060
Salix purpurea
SapurV1A.0188s0060
I
0.783
SapurV1A.0673s0120
Salix purpurea
SapurV1A.0673s0120
I
0.706
SapurV1A.1286s0030
Salix purpurea
SapurV1A.1286s0030
I
0.700
SapurV1A.1420s0050
Salix purpurea
SapurV1A.1420s0050
I
0.706
SapurV1A.2268s0010
Salix purpurea
SapurV1A.2268s0010
I
0.700
Sb07g023575
Sorghum bicolor
Sb07g023575
I
0.682
scaffold_601912.1
Arabidopsis lyrata
scaffold_601912.1
I
0.721
SELMODRAFT_105485
Selaginella moellendorffii
SELMODRAFT_105485
I
0.677
SELMODRAFT_27203
Selaginella moellendorffii
SELMODRAFT_27203
I
0.687
SELMODRAFT_38483
Selaginella moellendorffii
SELMODRAFT_38483
I
0.687
SELMODRAFT_38502
Selaginella moellendorffii
SELMODRAFT_38502
I
0.677
Solyc04g050750.1
Solanum lycopersicum
Solyc04g050750.1
I
0.725
Solyc04g080910.1
Solanum lycopersicum
Solyc04g080910.1
I
0.711
Solyc05g052410.1
Solanum lycopersicum
Solyc05g052410.1
I
0.714
TCM_026121
Theobroma cacao
TCM_026121
I
0.699
TCM_034132
Theobroma cacao
TCM_034132
I
0.793
Thhalv10015907m.g
Eutrema salsugineum
Thhalv10015907m.g
I
0.721
Thhalv10016913m.g
Eutrema salsugineum
Thhalv10016913m.g
I
0.682
Thhalv10019142m.g
Eutrema salsugineum
Thhalv10019142m.g
I
0.783
Traes_4AS_0D75149B5
Triticum aestivum
Traes_4AS_0D75149B5
I
0.681
VIT_13s0067g01960
Vitis vinifera
VIT_13s0067g01960
I
0.684
VIT_18s0001g13320
Vitis vinifera
VIT_18s0001g13320
I
0.796