CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pg.scaffold_1000495
(
Physcomitrella patens
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
fgenesh1_pg.scaffold_1000495
T007227_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fgenesh1_pg.scaffold_1000495
M01641_2.00
Physcomitrella patens
NNNNHACCGACAN
NTGTCGGTDNNNN
PBM
Weirauch et al.(2014)
pTH8490
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01641_2.00
AP2
51
99
NRFKGVRKRRNVRGFLVEIRPPRWKKTIWLGTYNTDEEAAGAFDAGLFY
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.scaffold_1000495
AP2
143
191
NRFKGVRKRRNVRGFLVEIRPPRWKKTIWLGTYNTDEEAAGAFDAGLFY
Links
Other
AP2
family TFs
Other
Physcomitrella patens
TFs
0 Related TFs
">No related TF found