gw1.117.121.1 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gw1.117.121.1 T007253_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.759 0.940
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.728 0.900
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.717 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.117.121.1 AP2 7 58

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.784
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.759
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.758
gw1.15.199.1 Physcomitrella patens gw1.15.199.1 I 0.745
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.733
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.728
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.728
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.727
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.721
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.717
gw1.259.45.1 Physcomitrella patens gw1.259.45.1 N 0.704
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.699
GSMUA_Achr9G05860_001 Musa acuminata GSMUA_Achr9G05860_001 I 0.697
estExt_gwp_gw1.C_150120 Physcomitrella patens estExt_gwp_gw1.C_150120 N 0.694
MLOC_17203 Hordeum vulgare MLOC_17203 I 0.692
gw1.155.87.1 Physcomitrella patens gw1.155.87.1 I 0.690
F775_11989 Aegilops tauschii F775_11989 I 0.686
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.686
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.686
BRADI1G38110 Brachypodium distachyon BRADI1G38110 I 0.685
BRADI3G33355 Brachypodium distachyon BRADI3G33355 I 0.685
F775_14820 Aegilops tauschii F775_14820 I 0.685
OMERI06G18780 Oryza meridionalis OMERI06G18780 I 0.685
ONIVA06G21640 Oryza nivara ONIVA06G21640 I 0.685
ORUFI06G19350 Oryza rufipogon ORUFI06G19350 I 0.685
SELMODRAFT_73146 Selaginella moellendorffii SELMODRAFT_73146 I 0.685
Si007144m.g Setaria italica Si007144m.g I 0.685
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I 0.685
GRMZM5G806839 Zea mays GRMZM5G806839 I 0.682
Cucsa.312570 Cucumis sativus Cucsa.312570 I 0.680
BRADI3G08790 Brachypodium distachyon BRADI3G08790 I 0.679
GRMZM2G005301 Zea mays GRMZM2G005301 I 0.679
GRMZM2G047918 Zea mays GRMZM2G047918 I 0.679
LPERR06G15020 Leersia perrieri LPERR06G15020 I 0.679
OGLUM02G09810 Oryza glumaepatula OGLUM02G09810 I 0.679
OGLUM10G18570 Oryza glumaepatula OGLUM10G18570 I 0.679
OMERI02G10950 Oryza meridionalis OMERI02G10950 I 0.679
OMERI08G00520 Oryza meridionalis OMERI08G00520 I 0.679
ONIVA02G10590 Oryza nivara ONIVA02G10590 I 0.679
ONIVA10G21000 Oryza nivara ONIVA10G21000 I 0.679
OPUNC02G08670 Oryza punctata OPUNC02G08670 I 0.679
OPUNC10G16830 Oryza punctata OPUNC10G16830 I 0.679
ORGLA02G0087100 Oryza glaberrima ORGLA02G0087100 I 0.679
ORGLA10G0136200 Oryza glaberrima ORGLA10G0136200 I 0.679
ORUFI02G09750 Oryza rufipogon ORUFI02G09750 I 0.679
Si018188m.g Setaria italica Si018188m.g I 0.679
Pavir.Ab00844 Panicum virgatum Pavir.Ab00844 I 0.679
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I 0.679
SELMODRAFT_73159 Selaginella moellendorffii SELMODRAFT_73159 I 0.677