CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.289.18.1
(
Physcomitrella patens
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gw1.289.18.1
T007288_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.701
0.812
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.289.18.1
AP2
1
52
HFRGVRQRPRGKFAAEIRDPAKQGARLWLGTFDTAEEAAIAYDRAAVRMRGS
Links
Other
AP2
family TFs
Other
Physcomitrella patens
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA005915
Oryza indica
BGIOSGA005915
I
0.709
LPERR02G21460
Leersia perrieri
LPERR02G21460
I
0.709
OGLUM02G26840
Oryza glumaepatula
OGLUM02G26840
I
0.709
OMERI02G25760
Oryza meridionalis
OMERI02G25760
I
0.709
ONIVA02G28810
Oryza nivara
ONIVA02G28810
I
0.709
OPUNC02G24070
Oryza punctata
OPUNC02G24070
I
0.709
ORGLA02G0226500
Oryza glaberrima
ORGLA02G0226500
I
0.709
ORUFI02G27830
Oryza rufipogon
ORUFI02G27830
I
0.709
OS02G0654700
Oryza sativa
OS02G0654700
I
0.709
VIT_16s0013g00890
Vitis vinifera
VIT_16s0013g00890
I
0.709
POPTR_0003s15030
Populus trichocarpa
POPTR_0003s15030
I
0.708
PRUPE_ppa010186mg
Prunus persica
PRUPE_ppa010186mg
I
0.708
TCM_014845
Theobroma cacao
TCM_014845
I
0.708
Pm019546
Prunus mume
Pm019546
I
0.708
cassava47034.m1
Manihot esculenta
cassava47034.m1
I
0.708
mgf020878m
Mimulus guttatus
mgf020878m
I
0.708
evm.TU.supercontig_13.250
Carica papaya
evm.TU.supercontig_13.250
I
0.705
PGSC0003DMG400016006
Solanum tuberosum
PGSC0003DMG400016006
I
0.704
Solyc05g052050.1
Solanum lycopersicum
Solyc05g052050.1
I
0.704
Eucgr.A02924
Eucalyptus grandis
Eucgr.A02924
I
0.704
SapurV1A.0059s0630
Salix purpurea
SapurV1A.0059s0630
I
0.703
ERF2_TOBAC
Nicotiana tabacum
ERF2_TOBAC
D
0.701
Gorai.001G051300
Gossypium raimondii
Gorai.001G051300
I
0.700
Gorai.007G046000
Gossypium raimondii
Gorai.007G046000
I
0.700
PK28774.1
Cannabis sativa
PK28774.1
I
0.700
mgf026054m
Mimulus guttatus
mgf026054m
I
0.695
MDP0000517257
Malus domestica
MDP0000517257
I
0.695
30147.m014331
Ricinus communis
30147.m014331
I
0.691
BGIOSGA014605
Oryza indica
BGIOSGA014605
I
0.689
OGLUM04G20600
Oryza glumaepatula
OGLUM04G20600
I
0.689
OMERI04G17100
Oryza meridionalis
OMERI04G17100
I
0.689
ONIVA04G18900
Oryza nivara
ONIVA04G18900
I
0.689
OPUNC04G18300
Oryza punctata
OPUNC04G18300
I
0.689
ORGLA04G0177100
Oryza glaberrima
ORGLA04G0177100
I
0.689
ORUFI04G22230
Oryza rufipogon
ORUFI04G22230
I
0.689
OS04G0546800
Oryza sativa
OS04G0546800
I
0.689
Traes_2AL_158F8EE88
Triticum aestivum
Traes_2AL_158F8EE88
I
0.689
Traes_2BL_CF47A74CC
Triticum aestivum
Traes_2BL_CF47A74CC
I
0.689
GRMZM2G055180
Zea mays
GRMZM2G055180
I
0.688
GRMZM2G080516
Zea mays
GRMZM2G080516
I
0.688
Sb06g024355
Sorghum bicolor
Sb06g024355
I
0.688
Si030692m.g
Setaria italica
Si030692m.g
I
0.688
Pavir.Ga01099
Panicum virgatum
Pavir.Ga01099
I
0.688
Pavir.Gb00956
Panicum virgatum
Pavir.Gb00956
I
0.688
LPERR04G16740
Leersia perrieri
LPERR04G16740
I
0.685
PGSC0003DMG400010750
Solanum tuberosum
PGSC0003DMG400010750
I
0.684
Solyc03g093610.1
Solanum lycopersicum
Solyc03g093610.1
I
0.684
e_gw1.357.22.1
Physcomitrella patens
e_gw1.357.22.1
I
0.683
gw1.2.361.1
Physcomitrella patens
gw1.2.361.1
I
0.683
evm.TU.supercontig_194.13
Carica papaya
evm.TU.supercontig_194.13
I
0.680
Ciclev10005891m.g
Citrus clementina
Ciclev10005891m.g
I
0.677
Gorai.004G195300
Gossypium raimondii
Gorai.004G195300
I
0.677
orange1.1g028566m.g
Citrus sinensis
orange1.1g028566m.g
I
0.677