gw1.296.16.1 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gw1.296.16.1 T007291_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.782 0.958
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.693 0.854
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.685 0.854
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.296.16.1 AP2 1 50

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.782
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.782
gw1.155.87.1 Physcomitrella patens gw1.155.87.1 I 0.781
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.771
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.768
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.701
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.699
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.699
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.693
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.685
SELMODRAFT_73146 Selaginella moellendorffii SELMODRAFT_73146 I 0.684