CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.23794s0027
(
Boechera stricta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Bostr.23794s0027
T007600_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q1ESI9_MAIZE
M09714_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB2A_02
0.692
0.796
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH
DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.684
0.837
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.681
0.796
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.23794s0027.1.p
AP2
70
121
CDYRGVRQRTWGKWVAEIREPGRGTRLWLGTFSSSYDAALAYDEAAKAMYGQ
Bostr.23794s0027.2.p
AP2
12
63
CDYRGVRQRTWGKWVAEIREPGRGTRLWLGTFSSSYDAALAYDEAAKAMYGQ
Links
Other
AP2
family TFs
Other
Boechera stricta
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
DREB2C
Arabidopsis lyrata
scaffold_402826.1
I
0.746
MDP0000165880
Malus domestica
MDP0000165880
I
0.741
PRUPE_ppa007606mg
Prunus persica
PRUPE_ppa007606mg
I
0.740
Pm018989
Prunus mume
Pm018989
I
0.740
gene21047-v1.0-hybrid
Fragaria vesca
gene21047-v1.0-hybrid
I
0.740
MDP0000147009
Malus domestica
MDP0000147009
I
0.740
MDP0000446783
Malus domestica
MDP0000446783
I
0.740
Thhalv10016913m.g
Eutrema salsugineum
Thhalv10016913m.g
I
0.735
AT2G40350
Arabidopsis thaliana
AT2G40350
I
0.723
BRADI3G12680
Brachypodium distachyon
BRADI3G12680
I
0.721
Aquca_013_00679
Aquilegia coerulea
Aquca_013_00679
I
0.721
TCM_026121
Theobroma cacao
TCM_026121
I
0.716
LPERR08G20650
Leersia perrieri
LPERR08G20650
I
0.713
PRUPE_ppa022996mg
Prunus persica
PRUPE_ppa022996mg
I
0.713
F775_01779
Aegilops tauschii
F775_01779
I
0.711
Aquca_030_00214
Aquilegia coerulea
Aquca_030_00214
I
0.711
29729.m002292
Ricinus communis
29729.m002292
I
0.705
Bo4g190040
Brassica oleracea
Bo4g190040
I
0.703
Bra017011
Brassica rapa
Bra017011
I
0.703
BGIOSGA026461
Oryza indica
BGIOSGA026461
I
0.702
BGIOSGA026464
Oryza indica
BGIOSGA026464
I
0.702
OB08G30790
Oryza brachyantha
OB08G30790
I
0.702
OGLUM08G25470
Oryza glumaepatula
OGLUM08G25470
I
0.702
OMERI08G18820
Oryza meridionalis
OMERI08G18820
I
0.702
ONIVA09G01190
Oryza nivara
ONIVA09G01190
I
0.702
OPUNC08G21890
Oryza punctata
OPUNC08G21890
I
0.702
ORGLA08G0193700
Oryza glaberrima
ORGLA08G0193700
I
0.702
ORUFI08G26490
Oryza rufipogon
ORUFI08G26490
I
0.702
DREB2C
Oryza sativa
OS08G0565200
I
0.702
Traes_2BL_B397F2CE3
Triticum aestivum
Traes_2BL_B397F2CE3
I
0.702
F775_02345
Aegilops tauschii
F775_02345
I
0.700
MLOC_66580
Hordeum vulgare
MLOC_66580
I
0.700
Si024059m.g
Setaria italica
Si024059m.g
I
0.700
Traes_2DL_B32203C91
Triticum aestivum
Traes_2DL_B32203C91
I
0.700
Ciclev10032029m.g
Citrus clementina
Ciclev10032029m.g
I
0.700
orange1.1g019546m.g
Citrus sinensis
orange1.1g019546m.g
I
0.700
Pavir.J22169
Panicum virgatum
Pavir.J22169
I
0.700
Pavir.J25464
Panicum virgatum
Pavir.J25464
I
0.700
POPTR_0010s19100
Populus trichocarpa
POPTR_0010s19100
I
0.698
cassava19475.valid.m1
Manihot esculenta
cassava19475.valid.m1
I
0.698
MLOC_12223
Hordeum vulgare
MLOC_12223
I
0.697
evm.TU.supercontig_19.121
Carica papaya
evm.TU.supercontig_19.121
I
0.696
Pavir.Ca01725
Panicum virgatum
Pavir.Ca01725
I
0.696
Pavir.Cb01298
Panicum virgatum
Pavir.Cb01298
I
0.696
F775_32062
Aegilops tauschii
F775_32062
I
0.695
Traes_1AL_A9FB6BF52
Triticum aestivum
Traes_1AL_A9FB6BF52
I
0.695
Traes_1BL_BDF0801D01
Triticum aestivum
Traes_1BL_BDF0801D01
I
0.695
TRIUR3_17409
Triticum urartu
TRIUR3_17409
I
0.695
LPERR08G12790
Leersia perrieri
LPERR08G12790
I
0.694
Sb09g016150
Sorghum bicolor
Sb09g016150
I
0.694
Cla001755
Citrullus lanatus
Cla001755
I
0.694
Cucsa.119440
Cucumis sativus
Cucsa.119440
I
0.694
GRMZM2G006745
Zea mays
GRMZM2G006745
I
0.692
Q1ESI9_MAIZE
Zea mays
Q1ESI9_MAIZE
D
0.692
Cla022803
Citrullus lanatus
Cla022803
I
0.692
Cucsa.231820
Cucumis sativus
Cucsa.231820
I
0.692
Lus10010632.g
Linum usitatissimum
Lus10010632.g
I
0.692
chr1.CM0195.510.nd
Lotus japonicus
chr1.CM0195.510.nd
I
0.690
PDK_20s1493381g003
Phoenix dactylifera
PDK_20s1493381g003
I
0.690
Si022619m.g
Setaria italica
Si022619m.g
I
0.689
Lus10006127.g
Linum usitatissimum
Lus10006127.g
I
0.689
Lus10024298.g
Linum usitatissimum
Lus10024298.g
I
0.689
POPTR_0008s07360
Populus trichocarpa
POPTR_0008s07360
I
0.688
SELMODRAFT_38498
Selaginella moellendorffii
SELMODRAFT_38498
N
0.688
SELMODRAFT_38500
Selaginella moellendorffii
SELMODRAFT_38500
N
0.688
Eucgr.F01607
Eucalyptus grandis
Eucgr.F01607
I
0.687
Eucgr.K02952
Eucalyptus grandis
Eucgr.K02952
I
0.686
PK07402.1
Cannabis sativa
PK07402.1
D
0.684
PK16401.1
Cannabis sativa
PK16401.1
N
0.684
SapurV1A.0673s0120
Salix purpurea
SapurV1A.0673s0120
I
0.683
SapurV1A.1420s0050
Salix purpurea
SapurV1A.1420s0050
I
0.683
Cucsa.136780
Cucumis sativus
Cucsa.136780
I
0.682
Ciclev10022244m.g
Citrus clementina
Ciclev10022244m.g
I
0.682
DREB2G
Arabidopsis thaliana
AT5G18450
D
0.681
Bo9g155940
Brassica oleracea
Bo9g155940
I
0.681
Bra002159
Brassica rapa
Bra002159
I
0.681
scaffold_601912.1
Arabidopsis lyrata
scaffold_601912.1
I
0.681
VIT_13s0067g01960
Vitis vinifera
VIT_13s0067g01960
I
0.681
Bostr.26527s0367
Boechera stricta
Bostr.26527s0367
I
0.681
Thhalv10015907m.g
Eutrema salsugineum
Thhalv10015907m.g
I
0.681
Traes_2AL_3FB37A3E7
Triticum aestivum
Traes_2AL_3FB37A3E7
I
0.680
Cucsa.130200
Cucumis sativus
Cucsa.130200
I
0.680
SapurV1A.1286s0030
Salix purpurea
SapurV1A.1286s0030
I
0.680
SapurV1A.2268s0010
Salix purpurea
SapurV1A.2268s0010
I
0.680
PGSC0003DMG400003706
Solanum tuberosum
PGSC0003DMG400003706
I
0.679
PGSC0003DMG400027117
Solanum tuberosum
PGSC0003DMG400027117
I
0.679
Solyc04g080910.1
Solanum lycopersicum
Solyc04g080910.1
I
0.679
Solyc05g052410.1
Solanum lycopersicum
Solyc05g052410.1
I
0.679
GSMUA_AchrUn_randomG14580_001
Musa acuminata
GSMUA_AchrUn_randomG14580_001
I
0.677
Cla006713
Citrullus lanatus
Cla006713
I
0.677