Cagra.3364s0010 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.3364s0010 T007776_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN

NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.702 0.816
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.702 0.816
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH

DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.702 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3364s0010.1.p AP2 115 166

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10021988m.g Capsella rubella Carubv10021988m.g I 0.832
TCM_011811 Theobroma cacao TCM_011811 I 0.759
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.759
Gorai.013G076100 Gossypium raimondii Gorai.013G076100 N 0.746
evm.TU.supercontig_1.178 Carica papaya evm.TU.supercontig_1.178 I 0.731
mgf006610m Mimulus guttatus mgf006610m I 0.708
ERF118 Arabidopsis thaliana AT1G68550 D 0.702
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.697
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.692
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.683
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.683