Cagra.6357s0007 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.6357s0007 T007798_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.758 0.980
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.721 0.878
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.721 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6357s0007.1.p AP2 93 143

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.767
Cla011673 Citrullus lanatus Cla011673 I 0.762
TCM_016176 Theobroma cacao TCM_016176 I 0.761
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.758
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.757
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.745
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.743
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.743
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.743
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.743
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.742
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.742
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.738
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.735
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.732
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.732
Bra027615 Brassica rapa Bra027615 I 0.732
Bra027616 Brassica rapa Bra027616 I 0.732
Bo9g028820 Brassica oleracea Bo9g028820 I 0.728
Bo9g036590 Brassica oleracea Bo9g036590 I 0.726
30147.m014311 Ricinus communis 30147.m014311 I 0.726
Cla004491 Citrullus lanatus Cla004491 I 0.725
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.725
ERF027 Arabidopsis thaliana AT1G12630 D 0.721
MDP0000189347 Malus domestica MDP0000189347 I 0.721
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.710
GLYMA10G38420 Glycine max GLYMA10G38420 I 0.701
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.700
Bo8g064940 Brassica oleracea Bo8g064940 I 0.697
Bra016761 Brassica rapa Bra016761 I 0.697
Ciclev10023840m.g Citrus clementina Ciclev10023840m.g I 0.690
MDP0000262710 Malus domestica MDP0000262710 I 0.685
BGIOSGA008802 Oryza indica BGIOSGA008802 I 0.684
GRMZM2G000520 Zea mays GRMZM2G000520 I 0.684
LPERR02G22600 Leersia perrieri LPERR02G22600 I 0.684
OBART02G27750 Oryza barthii OBART02G27750 I 0.684
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I 0.684
OMERI02G26970 Oryza meridionalis OMERI02G26970 I 0.684
ONIVA02G30630 Oryza nivara ONIVA02G30630 I 0.684
OPUNC02G25450 Oryza punctata OPUNC02G25450 I 0.684
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I 0.684
OS02G0676800 Oryza sativa OS02G0676800 I 0.684
Sb04g031960 Sorghum bicolor Sb04g031960 I 0.684
Si018039m.g Setaria italica Si018039m.g I 0.684
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I 0.684
PRUPE_ppa026499mg Prunus persica PRUPE_ppa026499mg I 0.683
Pm023766 Prunus mume Pm023766 I 0.683
Eucgr.D01924 Eucalyptus grandis Eucgr.D01924 I 0.683
VIT_16s0100g00400 Vitis vinifera VIT_16s0100g00400 I 0.682
VIT_02s0025g04440 Vitis vinifera VIT_02s0025g04440 N 0.679
Cla006314 Citrullus lanatus Cla006314 N 0.677