Carubv10005203m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10005203m.g T007829_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.831 1.000
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.831 1.000
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.702 0.760
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.702 0.760
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.700 0.860
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.700 0.860
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.684 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10005203m AP2 184 235

Links

Other AP2 family TFs
Other Capsella rubella TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF054 Arabidopsis thaliana AT4G28140 D 0.831
Bo8g054130 Brassica oleracea Bo8g054130 I 0.831
Bra010383 Brassica rapa Bra010383 I 0.831
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.831
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.831
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.831
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.822
Bra026280 Brassica rapa Bra026280 I 0.815
Bo7g111910 Brassica oleracea Bo7g111910 I 0.811
Bra024222 Brassica rapa Bra024222 I 0.811
Bo1g051230 Brassica oleracea Bo1g051230 I 0.802
ERF053 Arabidopsis thaliana AT2G20880 I 0.747
Bo8g102130 Brassica oleracea Bo8g102130 I 0.747
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.747
Bra031146 Brassica rapa Bra031146 I 0.739
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.739
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.724
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.711
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.711
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.711
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.702
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.702
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.701
ERF055 Arabidopsis thaliana AT1G36060 D 0.700
Bo5g069450 Brassica oleracea Bo5g069450 I 0.700
Bra040381 Brassica rapa Bra040381 I 0.700
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.700
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.700
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.700
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.700
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.698
Bo3g100470 Brassica oleracea Bo3g100470 I 0.697
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.695
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.695
Bo04101s010 Brassica oleracea Bo04101s010 I 0.693
Ca_16631 Cicer arietinum Ca_16631 I 0.693
Cla023489 Citrullus lanatus Cla023489 I 0.693
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.693
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.693
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.693
MDP0000453797 Malus domestica MDP0000453797 I 0.693
MDP0000683814 Malus domestica MDP0000683814 I 0.693
MDP0000865032 Malus domestica MDP0000865032 I 0.693
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.690
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.690
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.690
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.690
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.690
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.690
mgf002388m Mimulus guttatus mgf002388m I 0.690
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.690
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.690
PK27482.1 Cannabis sativa PK27482.1 I 0.690
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.690
Bra003659 Brassica rapa Bra003659 I 0.687
Bo7g119000 Brassica oleracea Bo7g119000 I 0.686
Bra017879 Brassica rapa Bra017879 I 0.686
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.686
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.685
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.685
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.685
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.685
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.685
TCM_001147 Theobroma cacao TCM_001147 I 0.685
28206.m000104 Ricinus communis 28206.m000104 I 0.685
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.685
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.685
mgf023311m Mimulus guttatus mgf023311m I 0.685
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.685
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.685
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.685
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.685
PK18885.1 Cannabis sativa PK18885.1 I 0.685
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.684
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.684
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.684
Bo5g037400 Brassica oleracea Bo5g037400 I 0.684
Bo6g121730 Brassica oleracea Bo6g121730 I 0.684
Bra008343 Brassica rapa Bra008343 I 0.684
Bra015634 Brassica rapa Bra015634 I 0.684
Bra031371 Brassica rapa Bra031371 I 0.684
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.684
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.684
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.684
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.684
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.684
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.684
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.684
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.684
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.684
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.684
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.684
TCM_034939 Theobroma cacao TCM_034939 I 0.684
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.684
Cla014376 Citrullus lanatus Cla014376 I 0.684
Cla022420 Citrullus lanatus Cla022420 I 0.684
Pm002052 Prunus mume Pm002052 I 0.684
Pm004824 Prunus mume Pm004824 I 0.684
29908.m006005 Ricinus communis 29908.m006005 I 0.684
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.684
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.684
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.684
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.684
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.684
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.684
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.684
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.684
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.684
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.684
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.684
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.684
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.684
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.684
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.684
MDP0000313476 Malus domestica MDP0000313476 I 0.684
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.684
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.684
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.684
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.684
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.683
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.683
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.683
Bra024357 Brassica rapa Bra024357 I 0.682
BGIOSGA011298 Oryza indica BGIOSGA011298 I 0.681
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I 0.681
OMERI03G06570 Oryza meridionalis OMERI03G06570 I 0.681
ONIVA03G06360 Oryza nivara ONIVA03G06360 I 0.681
OPUNC03G06400 Oryza punctata OPUNC03G06400 I 0.681
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I 0.681
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I 0.681
OS03G0191900 Oryza sativa OS03G0191900 I 0.681
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.681
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.681
ERF060 Arabidopsis thaliana AT4G39780 I 0.680
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.680
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.680
Bo3g152610 Brassica oleracea Bo3g152610 I 0.679
Bra010657 Brassica rapa Bra010657 I 0.679
GRMZM2G003466 Zea mays GRMZM2G003466 I 0.679
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.679
Sb01g044410 Sorghum bicolor Sb01g044410 I 0.679
Si036827m.g Setaria italica Si036827m.g I 0.679
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.679
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.679
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.679
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.679
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I 0.679
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.679
LPERR03G05980 Leersia perrieri LPERR03G05980 I 0.678
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.678
Ca_09578 Cicer arietinum Ca_09578 I 0.678
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.678
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.678
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.678
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.678
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.677
Bo6g081850 Brassica oleracea Bo6g081850 I 0.677
GRMZM2G113060 Zea mays GRMZM2G113060 I 0.677