Carubv10010347m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10010347m.g T007854_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.842 1.000
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.842 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010347m AP2 43 94

Links

Other AP2 family TFs
Other Capsella rubella TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF023 Arabidopsis thaliana AT1G01250 D 0.842
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.842
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.842
Bra032630 Brassica rapa Bra032630 I 0.838
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.836
Bo5g002600 Brassica oleracea Bo5g002600 I 0.822
Bra033274 Brassica rapa Bra033274 I 0.822
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.822
TCM_005130 Theobroma cacao TCM_005130 I 0.821
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.821
Bo8g117810 Brassica oleracea Bo8g117810 I 0.818
Ca_17638 Cicer arietinum Ca_17638 I 0.817
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.811
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.811
PK15554.1 Cannabis sativa PK15554.1 I 0.811
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.811
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.809
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.807
Pm018354 Prunus mume Pm018354 I 0.807
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.803
29742.m001400 Ricinus communis 29742.m001400 I 0.803
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.802
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.801
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.801
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.801
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.798
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.798
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.798
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.798
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.792
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.792
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.787
mgf020568m Mimulus guttatus mgf020568m I 0.782
Ca_01325 Cicer arietinum Ca_01325 I 0.781
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.779
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.777
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.758
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.749
cassava32974.m1 Manihot esculenta cassava32974.m1 I 0.690
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.683
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.682