CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10010891m.g
(
Capsella rubella
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Carubv10010891m.g
T007858_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.782
0.900
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.781
0.900
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.781
0.900
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.781
0.880
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.781
0.880
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC
GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.779
0.900
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN
NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.779
0.900
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.779
0.900
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.779
0.900
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.779
0.960
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.779
0.960
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.760
0.900
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.760
0.900
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10010891m
AP2
31
82
KPYRGIRMRKWGKWVAEIREPNKRSRLWLGSYTTDVAAARAYDVAVFYLRGP
Links
Other
AP2
family TFs
Other
Capsella rubella
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00051p00204250
Amborella trichopoda
AMTR_s00051p00204250
I
0.695
Aquca_007_00717
Aquilegia coerulea
Aquca_007_00717
I
0.802
Aquca_010_00625
Aquilegia coerulea
Aquca_010_00625
I
0.800
DEAR3
Arabidopsis lyrata
fgenesh2_kg.4__264__AT2G23340.1
I
0.782
CEJ1
Arabidopsis lyrata
fgenesh2_kg.5__1372__AT3G50260.1
I
0.781
RAP2.9
Arabidopsis lyrata
fgenesh2_kg.6__2823__AT4G06746.1
I
0.760
RAP2.1
Arabidopsis lyrata
scaffold_104275.1
I
0.781
RAP2.10
Arabidopsis lyrata
scaffold_700370.1
I
0.782
DEAR2
Arabidopsis lyrata
scaffold_803390.1
I
0.781
RAP2-1
Arabidopsis thaliana
AT1G46768
D
0.779
ERF008
Arabidopsis thaliana
AT2G23340
D
0.779
ERF011
Arabidopsis thaliana
AT3G50260
D
0.781
RAP2-9
Arabidopsis thaliana
AT4G06746
D
0.760
RAP2-10
Arabidopsis thaliana
AT4G36900
D
0.782
ERF010
Arabidopsis thaliana
AT5G67190
D
0.781
Bostr.0568s0141
Boechera stricta
Bostr.0568s0141
I
0.781
Bostr.12302s0138
Boechera stricta
Bostr.12302s0138
I
0.824
Bostr.27895s0153
Boechera stricta
Bostr.27895s0153
I
0.782
Bostr.3877s0058
Boechera stricta
Bostr.3877s0058
I
0.723
Bostr.6864s0220
Boechera stricta
Bostr.6864s0220
I
0.743
Bostr.7867s1581
Boechera stricta
Bostr.7867s1581
I
0.782
BRADI1G48320
Brachypodium distachyon
BRADI1G48320
I
0.762
BRADI5G24110
Brachypodium distachyon
BRADI5G24110
I
0.752
Bo1g004940
Brassica oleracea
Bo1g004940
I
0.773
Bo4g151460
Brassica oleracea
Bo4g151460
I
0.782
Bo7g063980
Brassica oleracea
Bo7g063980
I
0.781
Bo7g118430
Brassica oleracea
Bo7g118430
I
0.782
Bo8g079660
Brassica oleracea
Bo8g079660
I
0.781
Bo9g020380
Brassica oleracea
Bo9g020380
I
0.775
Bra011744
Brassica rapa
Bra011744
I
0.748
Bra012140
Brassica rapa
Bra012140
I
0.770
Bra014056
Brassica rapa
Bra014056
I
0.815
Bra017811
Brassica rapa
Bra017811
I
0.782
Bra032173
Brassica rapa
Bra032173
I
0.782
Bra036061
Brassica rapa
Bra036061
I
0.781
Bra037124
Brassica rapa
Bra037124
I
0.775
PK15612.1
Cannabis sativa
PK15612.1
I
0.804
Cagra.0342s0005
Capsella grandiflora
Cagra.0342s0005
I
0.781
Cagra.0706s0004
Capsella grandiflora
Cagra.0706s0004
I
0.781
Cagra.1735s0005
Capsella grandiflora
Cagra.1735s0005
I
0.824
Cagra.29993s0001
Capsella grandiflora
Cagra.29993s0001
I
0.782
Cagra.4909s0050
Capsella grandiflora
Cagra.4909s0050
I
0.782
Carubv10005767m.g
Capsella rubella
Carubv10005767m.g
I
0.782
Carubv10018162m.g
Capsella rubella
Carubv10018162m.g
I
0.781
Carubv10024198m.g
Capsella rubella
Carubv10024198m.g
I
0.782
Carubv10027999m.g
Capsella rubella
Carubv10027999m.g
I
0.781
Ca_01556
Cicer arietinum
Ca_01556
I
0.753
Ca_02170
Cicer arietinum
Ca_02170
I
0.763
Cla014175
Citrullus lanatus
Cla014175
I
0.747
Cla020550
Citrullus lanatus
Cla020550
I
0.742
Cla020961
Citrullus lanatus
Cla020961
I
0.815
Cla022937
Citrullus lanatus
Cla022937
I
0.809
Ciclev10002733m.g
Citrus clementina
Ciclev10002733m.g
I
0.806
Ciclev10026687m.g
Citrus clementina
Ciclev10026687m.g
I
0.793
orange1.1g031669m.g
Citrus sinensis
orange1.1g031669m.g
I
0.793
orange1.1g041516m.g
Citrus sinensis
orange1.1g041516m.g
I
0.806
Cucsa.102560
Cucumis sativus
Cucsa.102560
I
0.747
Cucsa.352470
Cucumis sativus
Cucsa.352470
I
0.815
Cucsa.367300
Cucumis sativus
Cucsa.367300
I
0.742
Cucsa.395960
Cucumis sativus
Cucsa.395960
I
0.809
Eucgr.F00192
Eucalyptus grandis
Eucgr.F00192
I
0.813
Eucgr.F02317
Eucalyptus grandis
Eucgr.F02317
I
0.799
Eucgr.F02319
Eucalyptus grandis
Eucgr.F02319
I
0.799
Eucgr.H02094
Eucalyptus grandis
Eucgr.H02094
I
0.793
Thhalv10000354m.g
Eutrema salsugineum
Thhalv10000354m.g
I
0.740
Thhalv10004985m.g
Eutrema salsugineum
Thhalv10004985m.g
I
0.781
Thhalv10026288m.g
Eutrema salsugineum
Thhalv10026288m.g
I
0.782
Thhalv10029052m.g
Eutrema salsugineum
Thhalv10029052m.g
I
0.768
gene09137-v1.0-hybrid
Fragaria vesca
gene09137-v1.0-hybrid
I
0.809
gene23873-v1.0-hybrid
Fragaria vesca
gene23873-v1.0-hybrid
I
0.795
GLYMA01G39540
Glycine max
GLYMA01G39540
I
0.765
GLYMA04G04355
Glycine max
GLYMA04G04355
I
0.787
GLYMA05G19050
Glycine max
GLYMA05G19050
I
0.764
GLYMA06G04490
Glycine max
GLYMA06G04490
I
0.787
GLYMA11G05700
Glycine max
GLYMA11G05700
I
0.765
GLYMA14G09320
Glycine max
GLYMA14G09320
I
0.815
GLYMA17G18580
Glycine max
GLYMA17G18580
I
0.752
GLYMA17G35860
Glycine max
GLYMA17G35860
I
0.809
Gorai.003G026100
Gossypium raimondii
Gorai.003G026100
I
0.793
Gorai.003G099700
Gossypium raimondii
Gorai.003G099700
I
0.822
Gorai.008G077900
Gossypium raimondii
Gorai.008G077900
I
0.793
Gorai.009G214300
Gossypium raimondii
Gorai.009G214300
I
0.815
Gorai.010G021900
Gossypium raimondii
Gorai.010G021900
I
0.822
MLOC_81350
Hordeum vulgare
MLOC_81350
I
0.753
LPERR04G23120
Leersia perrieri
LPERR04G23120
I
0.752
LPERR06G04000
Leersia perrieri
LPERR06G04000
I
0.762
Lus10009373.g
Linum usitatissimum
Lus10009373.g
I
0.742
Lus10010043.g
Linum usitatissimum
Lus10010043.g
I
0.802
Lus10018727.g
Linum usitatissimum
Lus10018727.g
I
0.800
LjSGA_004289.2
Lotus japonicus
LjSGA_004289.2
I
0.765
LjSGA_007705.1
Lotus japonicus
LjSGA_007705.1
I
0.748
LjSGA_134387.1
Lotus japonicus
LjSGA_134387.1
I
0.793
MDP0000125673
Malus domestica
MDP0000125673
I
0.795
MDP0000179962
Malus domestica
MDP0000179962
I
0.795
MDP0000756341
Malus domestica
MDP0000756341
I
0.784
cassava17493.valid.m1
Manihot esculenta
cassava17493.valid.m1
I
0.768
cassava47353.m1
Manihot esculenta
cassava47353.m1
I
0.800
cassava9153.m1
Manihot esculenta
cassava9153.m1
I
0.800
MTR_1g019110
Medicago truncatula
MTR_1g019110
I
0.794
MTR_3g102100
Medicago truncatula
MTR_3g102100
I
0.753
MTR_5g016750
Medicago truncatula
MTR_5g016750
I
0.763
mgf000289m
Mimulus guttatus
mgf000289m
I
0.788
mgf006561m
Mimulus guttatus
mgf006561m
I
0.779
mgf021115m
Mimulus guttatus
mgf021115m
I
0.785
mgf025363m
Mimulus guttatus
mgf025363m
I
0.775
GSMUA_Achr3G13190_001
Musa acuminata
GSMUA_Achr3G13190_001
I
0.789
GSMUA_Achr4G20280_001
Musa acuminata
GSMUA_Achr4G20280_001
I
0.781
GSMUA_Achr5G22190_001
Musa acuminata
GSMUA_Achr5G22190_001
I
0.764
GSMUA_Achr7G05410_001
Musa acuminata
GSMUA_Achr7G05410_001
I
0.742
GSMUA_Achr7G20800_001
Musa acuminata
GSMUA_Achr7G20800_001
I
0.729
GSMUA_Achr8G15640_001
Musa acuminata
GSMUA_Achr8G15640_001
I
0.720
GSMUA_Achr9G11310_001
Musa acuminata
GSMUA_Achr9G11310_001
I
0.732
GSMUA_AchrUn_randomG12040_001
Musa acuminata
GSMUA_AchrUn_randomG12040_001
I
0.784
GSMUA_AchrUn_randomG26940_001
Musa acuminata
GSMUA_AchrUn_randomG26940_001
I
0.777
OBART06G04460
Oryza barthii
OBART06G04460
I
0.762
ORGLA04G0237600
Oryza glaberrima
ORGLA04G0237600
I
0.752
ORGLA06G0041000
Oryza glaberrima
ORGLA06G0041000
I
0.762
OGLUM04G27370
Oryza glumaepatula
OGLUM04G27370
I
0.752
OGLUM06G04560
Oryza glumaepatula
OGLUM06G04560
I
0.762
BGIOSGA014220
Oryza indica
BGIOSGA014220
I
0.752
BGIOSGA014221
Oryza indica
BGIOSGA014221
I
0.752
BGIOSGA022380
Oryza indica
BGIOSGA022380
I
0.762
OMERI04G22870
Oryza meridionalis
OMERI04G22870
I
0.752
ONIVA04G25910
Oryza nivara
ONIVA04G25910
I
0.752
ONIVA06G05630
Oryza nivara
ONIVA06G05630
I
0.762
OPUNC06G04240
Oryza punctata
OPUNC06G04240
I
0.762
ORUFI06G04420
Oryza rufipogon
ORUFI06G04420
I
0.762
OS04G0648900
Oryza sativa
OS04G0648900
I
0.752
OS06G0166400
Oryza sativa
OS06G0166400
I
0.762
Pavir.J04844
Panicum virgatum
Pavir.J04844
I
0.752
Pavir.J20437
Panicum virgatum
Pavir.J20437
I
0.762
Pavir.J27349
Panicum virgatum
Pavir.J27349
I
0.752
Pavir.J34361
Panicum virgatum
Pavir.J34361
I
0.762
POPTR_0002s12550
Populus trichocarpa
POPTR_0002s12550
I
0.800
POPTR_0005s18430
Populus trichocarpa
POPTR_0005s18430
I
0.768
POPTR_0007s10750
Populus trichocarpa
POPTR_0007s10750
I
0.768
POPTR_0014s02530
Populus trichocarpa
POPTR_0014s02530
I
0.800
PRUPE_ppa012302mg
Prunus persica
PRUPE_ppa012302mg
I
0.790
PRUPE_ppa012516mg
Prunus persica
PRUPE_ppa012516mg
I
0.793
28718.m000038
Ricinus communis
28718.m000038
I
0.793
30170.m013843
Ricinus communis
30170.m013843
I
0.800
SapurV1A.0167s0190
Salix purpurea
SapurV1A.0167s0190
I
0.802
SapurV1A.0423s0180
Salix purpurea
SapurV1A.0423s0180
I
0.800
SapurV1A.0689s0100
Salix purpurea
SapurV1A.0689s0100
I
0.768
SapurV1A.1340s0030
Salix purpurea
SapurV1A.1340s0030
I
0.754
SapurV1A.1616s0040
Salix purpurea
SapurV1A.1616s0040
I
0.754
SapurV1A.2355s0030
Salix purpurea
SapurV1A.2355s0030
I
0.800
Solyc04g078640.1
Solanum lycopersicum
Solyc04g078640.1
I
0.788
PGSC0003DMG400004005
Solanum tuberosum
PGSC0003DMG400004005
I
0.784
PGSC0003DMG400007951
Solanum tuberosum
PGSC0003DMG400007951
I
0.788
PGSC0003DMG400034101
Solanum tuberosum
PGSC0003DMG400034101
I
0.772
Sb06g030660
Sorghum bicolor
Sb06g030660
I
0.752
Sb10g004580
Sorghum bicolor
Sb10g004580
I
0.762
TCM_000669
Theobroma cacao
TCM_000669
I
0.793
TCM_033791
Theobroma cacao
TCM_033791
I
0.813
Traes_2BL_1E57B73B21
Triticum aestivum
Traes_2BL_1E57B73B21
I
0.753
VIT_07s0031g00190
Vitis vinifera
VIT_07s0031g00190
I
0.754
VIT_18s0001g10150
Vitis vinifera
VIT_18s0001g10150
I
0.758
GRMZM2G119865
Zea mays
GRMZM2G119865
I
0.729
GRMZM2G174917
Zea mays
GRMZM2G174917
I
0.752
GRMZM2G301860
Zea mays
GRMZM2G301860
I
0.728
GRMZM2G421033
Zea mays
GRMZM2G421033
I
0.752