Carubv10015558m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10015558m.g T007888_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.892 0.894
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.892 0.894
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.853 0.837
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.853 0.837
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.838 0.817
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.838 0.817
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.826 0.837
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.826 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015558m AP2 179 236
Carubv10015558m AP2 278 330

Links

Other AP2 family TFs
Other Capsella rubella TFs

525 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN946_scf184473.g37 Trametes cinnabarina BN946_scf184473.g37 N
CERSUDRAFT_96544 Ceriporiopsis subvermispora CERSUDRAFT_96544 N
CY34DRAFT_83126 Suillus luteus CY34DRAFT_83126 N
DICSQDRAFT_69568 Dichomitus squalens DICSQDRAFT_69568 N
fgenesh1_pg.C_scaffold_7000511 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000511 N
FIBRA_01217 Fibroporia radiculosa FIBRA_01217 N
FOMPIDRAFT_1154048 Fomitopsis pinicola FOMPIDRAFT_1154048 N
GALMADRAFT_239642 Galerina marginata GALMADRAFT_239642 N
HYDPIDRAFT_118618 Hydnomerulius pinastri HYDPIDRAFT_118618 N
JAAARDRAFT_176786 Jaapia argillacea JAAARDRAFT_176786 N
K443DRAFT_89573 Laccaria amethystina K443DRAFT_89573 N
LACBIDRAFT_294399 Laccaria bicolor LACBIDRAFT_294399 N
M378DRAFT_17245 Amanita muscaria M378DRAFT_17245 N
M413DRAFT_270689 Hebeloma cylindrosporum M413DRAFT_270689 N
Moror_6216 Moniliophthora roreri Moror_6216 N
MPER_08235 Moniliophthora perniciosa MPER_08235 N
PAXINDRAFT_168862 Paxillus involutus PAXINDRAFT_168862 N
PAXRUDRAFT_374674 Paxillus rubicundulus PAXRUDRAFT_374674 N
PHACADRAFT_251234 Phanerochaete carnosa PHACADRAFT_251234 N
PHLGIDRAFT_14993 Phlebiopsis gigantea PHLGIDRAFT_14993 N
PLEOSDRAFT_1088140 Pleurotus ostreatus PLEOSDRAFT_1088140 N
POSPLDRAFT_103510 Postia placenta POSPLDRAFT_103510 N
POSPLDRAFT_95293 Postia placenta POSPLDRAFT_95293 N
SCLCIDRAFT_1216709 Scleroderma citrinum SCLCIDRAFT_1216709 N
SERLA73DRAFT_190437 Serpula lacrymans SERLA73DRAFT_190437 N