CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10026292m.g
(
Capsella rubella
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Carubv10026292m.g
T007930_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.871
1.000
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC
GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.855
0.959
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10026292m
AP2
163
213
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGL
Links
Other
AP2
family TFs
Other
Capsella rubella
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TOE2
Arabidopsis thaliana
AT5G60120
D
0.871
Bo9g141100
Brassica oleracea
Bo9g141100
I
0.871
Bra002510
Brassica rapa
Bra002510
I
0.871
Bra020262
Brassica rapa
Bra020262
I
0.871
Bostr.26833s0222
Boechera stricta
Bostr.26833s0222
I
0.871
Cagra.1317s0005
Capsella grandiflora
Cagra.1317s0005
I
0.871
Thhalv10013367m.g
Eutrema salsugineum
Thhalv10013367m.g
I
0.871
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
0.867
Sb10g001490
Sorghum bicolor
Sb10g001490
I
0.867
GRMZM2G416701
Zea mays
GRMZM2G416701
I
0.863
PGSC0003DMG400012038
Solanum tuberosum
PGSC0003DMG400012038
I
0.863
Cla020387
Citrullus lanatus
Cla020387
I
0.863
Cucsa.165940
Cucumis sativus
Cucsa.165940
I
0.863
Gorai.003G139800
Gossypium raimondii
Gorai.003G139800
I
0.863
Gorai.011G241700
Gossypium raimondii
Gorai.011G241700
I
0.863
PK16652.1
Cannabis sativa
PK16652.1
I
0.863
Lus10040365.g
Linum usitatissimum
Lus10040365.g
I
0.862
SMZ
Arabidopsis thaliana
AT3G54990
D
0.855
Bo8g087280
Brassica oleracea
Bo8g087280
I
0.855
Bra007123
Brassica rapa
Bra007123
I
0.855
SMZ
Arabidopsis lyrata
fgenesh2_kg.5__1910__AT3G54990.1
I
0.855
Bostr.0697s0115
Boechera stricta
Bostr.0697s0115
I
0.855
Cagra.1742s0021
Capsella grandiflora
Cagra.1742s0021
I
0.855
Carubv10018526m.g
Capsella rubella
Carubv10018526m.g
I
0.855
Thhalv10010513m.g
Eutrema salsugineum
Thhalv10010513m.g
I
0.855
MTR_1g049140
Medicago truncatula
MTR_1g049140
I
0.851
Eucgr.G02793
Eucalyptus grandis
Eucgr.G02793
I
0.851
GLYMA02G09600
Glycine max
GLYMA02G09600
I
0.847
GLYMA10G22390
Glycine max
GLYMA10G22390
I
0.847
Bo6g068410
Brassica oleracea
Bo6g068410
I
0.832
PRUPE_ppa018704mg
Prunus persica
PRUPE_ppa018704mg
I
0.830
Pm018608
Prunus mume
Pm018608
I
0.830
gene23316-v1.0-hybrid
Fragaria vesca
gene23316-v1.0-hybrid
I
0.826
MDP0000281079
Malus domestica
MDP0000281079
I
0.820
MDP0000285955
Malus domestica
MDP0000285955
I
0.820
Ca_26761
Cicer arietinum
Ca_26761
I
0.812
Cagra.0716s0040
Capsella grandiflora
Cagra.0716s0040
I
0.795
Carubv10023614m.g
Capsella rubella
Carubv10023614m.g
I
0.795
SNZ
Arabidopsis thaliana
AT2G39250
I
0.788
SNZ
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001673
I
0.788
Bostr.23794s0149
Boechera stricta
Bostr.23794s0149
I
0.788
Al_scaffold_0003_2798
Arabidopsis lyrata
Al_scaffold_0003_2798
I
0.691
MDP0000130802
Malus domestica
MDP0000130802
I
0.684