CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10010348m.g
(
Citrus clementina
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Ciclev10010348m.g
T007990_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.796
0.900
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.796
0.900
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.794
0.920
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.794
0.920
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10010348m
AP2
23
74
PKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYETPEKAARAFDAALFCLRGR
Links
Other
AP2
family TFs
Other
Citrus clementina
TFs
148 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ORA47
Vitis vinifera
VIT_04s0008g02230
I
0.804
Bo8g102870
Brassica oleracea
Bo8g102870
I
0.803
Bra031069
Brassica rapa
Bra031069
I
0.803
Thhalv10009812m.g
Eutrema salsugineum
Thhalv10009812m.g
I
0.802
cassava10604.m1
Manihot esculenta
cassava10604.m1
I
0.800
gene12919-v1.0-hybrid
Fragaria vesca
gene12919-v1.0-hybrid
I
0.800
mgf024162m
Mimulus guttatus
mgf024162m
I
0.798
MDP0000704216
Malus domestica
MDP0000704216
I
0.797
ERF018
Arabidopsis thaliana
AT1G74930
D
0.796
ORA47
Arabidopsis lyrata
fgenesh2_kg.2__1761__AT1G74930.1
I
0.796
POPTR_0006s23480
Populus trichocarpa
POPTR_0006s23480
I
0.796
Bostr.3288s0141
Boechera stricta
Bostr.3288s0141
I
0.796
SapurV1A.0373s0040
Salix purpurea
SapurV1A.0373s0040
I
0.796
SapurV1A.2229s0010
Salix purpurea
SapurV1A.2229s0010
I
0.796
Bra015882
Brassica rapa
Bra015882
I
0.795
POPTR_0006s14100
Populus trichocarpa
POPTR_0006s14100
I
0.795
cassava25057.valid.m1
Manihot esculenta
cassava25057.valid.m1
I
0.795
ERF017
Arabidopsis thaliana
AT1G19210
D
0.794
fgenesh2_kg.1__2098__AT1G19210.1
Arabidopsis lyrata
fgenesh2_kg.1__2098__AT1G19210.1
I
0.794
PRUPE_ppa011336mg
Prunus persica
PRUPE_ppa011336mg
I
0.794
Pm027117
Prunus mume
Pm027117
I
0.794
29739.m003716
Ricinus communis
29739.m003716
I
0.794
mgf021940m
Mimulus guttatus
mgf021940m
I
0.794
Cagra.1961s0079
Capsella grandiflora
Cagra.1961s0079
I
0.794
Carubv10011394m.g
Capsella rubella
Carubv10011394m.g
I
0.794
SapurV1A.0057s0300
Salix purpurea
SapurV1A.0057s0300
I
0.794
Bo6g119120
Brassica oleracea
Bo6g119120
I
0.792
TCM_037486
Theobroma cacao
TCM_037486
I
0.792
cassava20547.m1
Manihot esculenta
cassava20547.m1
I
0.792
evm.TU.supercontig_266.5
Carica papaya
evm.TU.supercontig_266.5
I
0.792
VIT_11s0016g00660
Vitis vinifera
VIT_11s0016g00660
I
0.790
Bo6g086740
Brassica oleracea
Bo6g086740
I
0.788
Bra003780
Brassica rapa
Bra003780
I
0.788
Ca_09124
Cicer arietinum
Ca_09124
I
0.788
Aquca_076_00039
Aquilegia coerulea
Aquca_076_00039
I
0.788
Cagra.0402s0035
Capsella grandiflora
Cagra.0402s0035
I
0.788
Carubv10020965m.g
Capsella rubella
Carubv10020965m.g
I
0.788
Eucgr.C00780
Eucalyptus grandis
Eucgr.C00780
I
0.788
Eucgr.C03297
Eucalyptus grandis
Eucgr.C03297
I
0.788
Gorai.001G016800
Gossypium raimondii
Gorai.001G016800
I
0.788
Ciclev10009540m.g
Citrus clementina
Ciclev10009540m.g
I
0.786
orange1.1g029068m.g
Citrus sinensis
orange1.1g029068m.g
I
0.786
SapurV1A.0521s0050
Salix purpurea
SapurV1A.0521s0050
I
0.786
TCM_037415
Theobroma cacao
TCM_037415
I
0.785
mgf025452m
Mimulus guttatus
mgf025452m
I
0.785
Gorai.010G091100
Gossypium raimondii
Gorai.010G091100
I
0.785
MDP0000649022
Malus domestica
MDP0000649022
I
0.785
POPTR_0006s14090
Populus trichocarpa
POPTR_0006s14090
I
0.783
Lus10033420.g
Linum usitatissimum
Lus10033420.g
I
0.781
Lus10034885.g
Linum usitatissimum
Lus10034885.g
I
0.781
POPTR_0018s08320
Populus trichocarpa
POPTR_0018s08320
I
0.780
Bo8g068370
Brassica oleracea
Bo8g068370
I
0.779
Bra016518
Brassica rapa
Bra016518
I
0.779
GLYMA17G05240
Glycine max
GLYMA17G05240
I
0.779
chr5.CM0040.40.nd
Lotus japonicus
chr5.CM0040.40.nd
I
0.778
GLYMA13G17250
Glycine max
GLYMA13G17250
I
0.777
Lus10009798.g
Linum usitatissimum
Lus10009798.g
I
0.777
Lus10038082.g
Linum usitatissimum
Lus10038082.g
I
0.777
Thhalv10019652m.g
Eutrema salsugineum
Thhalv10019652m.g
I
0.777
AMTR_s00007p00268280
Amborella trichopoda
AMTR_s00007p00268280
I
0.776
MTR_1g014800
Medicago truncatula
MTR_1g014800
I
0.774
PGSC0003DMG400002899
Solanum tuberosum
PGSC0003DMG400002899
I
0.773
Solyc12g009240.1
Solanum lycopersicum
Solyc12g009240.1
I
0.773
Gorai.001G019100
Gossypium raimondii
Gorai.001G019100
I
0.773
Bostr.7128s0526
Boechera stricta
Bostr.7128s0526
I
0.770
Bra025719
Brassica rapa
Bra025719
I
0.767
Cla007584
Citrullus lanatus
Cla007584
I
0.767
MTR_1g014820
Medicago truncatula
MTR_1g014820
I
0.766
MTR_1g014860
Medicago truncatula
MTR_1g014860
I
0.766
29739.m003647
Ricinus communis
29739.m003647
I
0.765
Gorai.004G285900
Gossypium raimondii
Gorai.004G285900
I
0.765
Gorai.013G222700
Gossypium raimondii
Gorai.013G222700
I
0.765
Ca_01683
Cicer arietinum
Ca_01683
I
0.764
Cla011318
Citrullus lanatus
Cla011318
I
0.764
Cucsa.141980
Cucumis sativus
Cucsa.141980
I
0.764
GLYMA04G06095
Glycine max
GLYMA04G06095
I
0.763
GLYMA06G06101
Glycine max
GLYMA06G06101
I
0.763
GLYMA17G33535
Glycine max
GLYMA17G33535
I
0.763
Pavir.J00593
Panicum virgatum
Pavir.J00593
I
0.758
GRMZM2G097081
Zea mays
GRMZM2G097081
I
0.757
Si019636m.g
Setaria italica
Si019636m.g
I
0.756
Pavir.Aa00296
Panicum virgatum
Pavir.Aa00296
I
0.756
GLYMA09G08330
Glycine max
GLYMA09G08330
I
0.755
GLYMA14G12505
Glycine max
GLYMA14G12505
I
0.755
GLYMA15G19910
Glycine max
GLYMA15G19910
I
0.752
Bo2g023630
Brassica oleracea
Bo2g023630
I
0.751
Bra020162
Brassica rapa
Bra020162
I
0.750
MTR_2g043050
Medicago truncatula
MTR_2g043050
I
0.749
LPERR02G28660
Leersia perrieri
LPERR02G28660
I
0.746
Cucsa.271180
Cucumis sativus
Cucsa.271180
I
0.746
GSMUA_Achr5G05160_001
Musa acuminata
GSMUA_Achr5G05160_001
I
0.745
Ca_19295
Cicer arietinum
Ca_19295
I
0.737
Bo3g015600
Brassica oleracea
Bo3g015600
I
0.736
Bra006599
Brassica rapa
Bra006599
I
0.736
chr6.CM0420.30.nd
Lotus japonicus
chr6.CM0420.30.nd
I
0.736
Bo9g149820
Brassica oleracea
Bo9g149820
I
0.735
Bra002377
Brassica rapa
Bra002377
I
0.735
MTR_2g043030
Medicago truncatula
MTR_2g043030
I
0.735
MTR_2g043040
Medicago truncatula
MTR_2g043040
I
0.735
scaffold_602234.1
Arabidopsis lyrata
scaffold_602234.1
I
0.735
Traes_6DL_FA861D610
Triticum aestivum
Traes_6DL_FA861D610
I
0.735
Bostr.26527s0082
Boechera stricta
Bostr.26527s0082
I
0.735
Carubv10001903m.g
Capsella rubella
Carubv10001903m.g
I
0.735
Gorai.004G285200
Gossypium raimondii
Gorai.004G285200
I
0.735
PK18548.1
Cannabis sativa
PK18548.1
I
0.735
Ca_19297
Cicer arietinum
Ca_19297
I
0.733
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.731
MTR_3g105510
Medicago truncatula
MTR_3g105510
I
0.731
Ca_19296
Cicer arietinum
Ca_19296
I
0.731
ERF016
Arabidopsis thaliana
AT5G21960
I
0.729
chr1.CM0133.1010.nc
Lotus japonicus
chr1.CM0133.1010.nc
I
0.729
GSMUA_AchrUn_randomG02200_001
Musa acuminata
GSMUA_AchrUn_randomG02200_001
I
0.728
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.728
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.728
Si008104m.g
Setaria italica
Si008104m.g
I
0.726
Thhalv10015465m.g
Eutrema salsugineum
Thhalv10015465m.g
I
0.726
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.725
Cla022291
Citrullus lanatus
Cla022291
I
0.724
Cucsa.055920
Cucumis sativus
Cucsa.055920
I
0.724
BGIOSGA005486
Oryza indica
BGIOSGA005486
I
0.710
OGLUM02G35980
Oryza glumaepatula
OGLUM02G35980
I
0.710
OMERI01G37050
Oryza meridionalis
OMERI01G37050
I
0.710
ONIVA02G36910
Oryza nivara
ONIVA02G36910
I
0.710
OPUNC02G32160
Oryza punctata
OPUNC02G32160
I
0.710
ORGLA02G0301600
Oryza glaberrima
ORGLA02G0301600
I
0.710
ORUFI02G36340
Oryza rufipogon
ORUFI02G36340
I
0.710
OS02G0781300
Oryza sativa
OS02G0781300
I
0.710
Traes_6AL_E6DAE246D
Triticum aestivum
Traes_6AL_E6DAE246D
I
0.704
MTR_2g043020
Medicago truncatula
MTR_2g043020
I
0.703
MTR_1g014780
Medicago truncatula
MTR_1g014780
I
0.700
BGIOSGA028781
Oryza indica
BGIOSGA028781
I
0.698
GRMZM2G163745
Zea mays
GRMZM2G163745
I
0.698
LPERR08G14000
Leersia perrieri
LPERR08G14000
I
0.698
OB08G24280
Oryza brachyantha
OB08G24280
I
0.698
OBART08G16950
Oryza barthii
OBART08G16950
I
0.698
OGLUM08G17690
Oryza glumaepatula
OGLUM08G17690
I
0.698
ONIVA08G18470
Oryza nivara
ONIVA08G18470
I
0.698
OPUNC08G14840
Oryza punctata
OPUNC08G14840
I
0.698
ORUFI08G18850
Oryza rufipogon
ORUFI08G18850
I
0.698
OS08G0454000
Oryza sativa
OS08G0454000
I
0.698
Si015027m.g
Setaria italica
Si015027m.g
I
0.698
Aquca_076_00040
Aquilegia coerulea
Aquca_076_00040
I
0.698
Pavir.Fa00741
Panicum virgatum
Pavir.Fa00741
I
0.698
Pavir.Fb01602
Panicum virgatum
Pavir.Fb01602
I
0.698
GSMUA_Achr9G14360_001
Musa acuminata
GSMUA_Achr9G14360_001
I
0.695
BRADI3G37544
Brachypodium distachyon
BRADI3G37544
I
0.689
TRAES3BF084200010CFD_g
Triticum aestivum
TRAES3BF084200010CFD_g
I
0.688
F775_23111
Aegilops tauschii
F775_23111
I
0.685