CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10021422m.g
(
Citrus clementina
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Ciclev10021422m.g
T008015_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.731
0.745
ERF069
M01604_2.00
Arabidopsis thaliana
NNGCCGNNN
NNNCGGCNN
PBM
Weirauch et al.(2014)
pTH7550
0.711
0.725
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.705
0.725
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.705
0.725
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.705
0.725
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.704
0.686
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.685
0.686
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.685
0.686
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10021422m
AP2
104
155
NKYRGVRMRPWGKWAAEIRDPFQRTRVWLGTFETAEEAALVYDQAAIRLKGP
Links
Other
AP2
family TFs
Other
Citrus clementina
TFs
231 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g022553m.g
Citrus sinensis
orange1.1g022553m.g
I
0.828
cassava46470.m1
Manihot esculenta
cassava46470.m1
I
0.737
Thhalv10008928m.g
Eutrema salsugineum
Thhalv10008928m.g
I
0.733
CRF3
Arabidopsis thaliana
AT5G53290
D
0.731
Bo2g045930
Brassica oleracea
Bo2g045930
I
0.731
Bo9g111050
Brassica oleracea
Bo9g111050
I
0.731
Bra003068
Brassica rapa
Bra003068
I
0.731
Bra022643
Brassica rapa
Bra022643
I
0.731
CRF3
Arabidopsis lyrata
scaffold_801806.1
I
0.731
cassava15416.m1
Manihot esculenta
cassava15416.m1
I
0.731
Bostr.26833s0952
Boechera stricta
Bostr.26833s0952
I
0.731
Cagra.0084s0074
Capsella grandiflora
Cagra.0084s0074
I
0.731
Carubv10026682m.g
Capsella rubella
Carubv10026682m.g
I
0.731
gene32028-v1.0-hybrid
Fragaria vesca
gene32028-v1.0-hybrid
I
0.731
Gorai.007G105700
Gossypium raimondii
Gorai.007G105700
I
0.731
Lus10017550.g
Linum usitatissimum
Lus10017550.g
I
0.731
Thhalv10013898m.g
Eutrema salsugineum
Thhalv10013898m.g
I
0.731
TCM_005203
Theobroma cacao
TCM_005203
I
0.730
Gorai.001G156900
Gossypium raimondii
Gorai.001G156900
I
0.724
Gorai.008G123400
Gossypium raimondii
Gorai.008G123400
I
0.723
MTR_3g090760
Medicago truncatula
MTR_3g090760
I
0.722
PRUPE_ppa008720mg
Prunus persica
PRUPE_ppa008720mg
I
0.722
Ca_03948
Cicer arietinum
Ca_03948
I
0.722
Pm019793
Prunus mume
Pm019793
I
0.722
GLYMA01G43350
Glycine max
GLYMA01G43350
I
0.721
Gorai.007G105600
Gossypium raimondii
Gorai.007G105600
I
0.720
GLYMA04G41740
Glycine max
GLYMA04G41740
I
0.718
GLYMA06G13040
Glycine max
GLYMA06G13040
I
0.718
mgf023807m
Mimulus guttatus
mgf023807m
I
0.718
Ca_13084
Cicer arietinum
Ca_13084
I
0.717
gene13118-v1.0-hybrid
Fragaria vesca
gene13118-v1.0-hybrid
I
0.715
Bo3g022760
Brassica oleracea
Bo3g022760
I
0.714
Bra029079
Brassica rapa
Bra029079
I
0.714
fgenesh2_kg.1__2503__AT1G22985.1
Arabidopsis lyrata
fgenesh2_kg.1__2503__AT1G22985.1
I
0.713
GLYMA11G02140
Glycine max
GLYMA11G02140
I
0.713
cassava32471.m1
Manihot esculenta
cassava32471.m1
I
0.713
SapurV1A.1111s0070
Salix purpurea
SapurV1A.1111s0070
I
0.713
Bo8g071630
Brassica oleracea
Bo8g071630
I
0.712
LjSGA_008718.1
Lotus japonicus
LjSGA_008718.1
I
0.712
ERF069
Arabidopsis thaliana
AT1G22985
D
0.711
PGSC0003DMG400002350
Solanum tuberosum
PGSC0003DMG400002350
I
0.711
PGSC0003DMG400036493
Solanum tuberosum
PGSC0003DMG400036493
I
0.711
Solyc03g007460.1
Solanum lycopersicum
Solyc03g007460.1
I
0.711
Solyc06g051840.1
Solanum lycopersicum
Solyc06g051840.1
I
0.711
TCM_015336
Theobroma cacao
TCM_015336
I
0.711
VIT_16s0050g02400
Vitis vinifera
VIT_16s0050g02400
I
0.711
30169.m006542
Ricinus communis
30169.m006542
I
0.711
cassava7228.valid.m1
Manihot esculenta
cassava7228.valid.m1
I
0.711
mgf018116m
Mimulus guttatus
mgf018116m
I
0.711
Aquca_013_00161
Aquilegia coerulea
Aquca_013_00161
I
0.711
Eucgr.K00321
Eucalyptus grandis
Eucgr.K00321
I
0.711
Gorai.006G200400
Gossypium raimondii
Gorai.006G200400
I
0.711
Gorai.008G271200
Gossypium raimondii
Gorai.008G271200
I
0.711
PK28823.1
Cannabis sativa
PK28823.1
I
0.711
CRF1
Arabidopsis thaliana
AT4G11140
I
0.710
Bo1g051080
Brassica oleracea
Bo1g051080
I
0.710
Bra026295
Brassica rapa
Bra026295
I
0.710
CRF5
Arabidopsis lyrata
fgenesh2_kg.4__2841__AT2G46310.1
I
0.710
CRF1
Arabidopsis lyrata
fgenesh2_kg.6__3086__AT4G11140.1
I
0.710
MDP0000308379
Malus domestica
MDP0000308379
I
0.710
MDP0000854039
Malus domestica
MDP0000854039
I
0.710
Bo3g045150
Brassica oleracea
Bo3g045150
I
0.708
Cla004291
Citrullus lanatus
Cla004291
I
0.708
Cucsa.012850
Cucumis sativus
Cucsa.012850
I
0.708
Bostr.25463s0212
Boechera stricta
Bostr.25463s0212
I
0.708
Bostr.25993s0138
Boechera stricta
Bostr.25993s0138
I
0.708
Cagra.0050s0068
Capsella grandiflora
Cagra.0050s0068
I
0.708
Carubv10023769m.g
Capsella rubella
Carubv10023769m.g
I
0.708
SapurV1A.1043s0120
Salix purpurea
SapurV1A.1043s0120
I
0.708
SapurV1A.1442s0010
Salix purpurea
SapurV1A.1442s0010
I
0.708
SapurV1A.2151s0020
Salix purpurea
SapurV1A.2151s0020
I
0.708
Thhalv10029132m.g
Eutrema salsugineum
Thhalv10029132m.g
I
0.708
CRF6
Arabidopsis thaliana
AT3G61630
I
0.707
Bo8g053000
Brassica oleracea
Bo8g053000
I
0.707
Bra010389
Brassica rapa
Bra010389
I
0.707
Aquca_037_00045
Aquilegia coerulea
Aquca_037_00045
I
0.707
Bostr.7867s0626
Boechera stricta
Bostr.7867s0626
I
0.707
Carubv10001539m.g
Capsella rubella
Carubv10001539m.g
I
0.707
POPTR_0012s01260
Populus trichocarpa
POPTR_0012s01260
I
0.706
Cla002067
Citrullus lanatus
Cla002067
I
0.706
Cla004992
Citrullus lanatus
Cla004992
I
0.706
Cucsa.364910
Cucumis sativus
Cucsa.364910
I
0.706
Ciclev10005220m.g
Citrus clementina
Ciclev10005220m.g
I
0.706
orange1.1g047455m.g
Citrus sinensis
orange1.1g047455m.g
I
0.706
CRF4
Arabidopsis thaliana
AT4G27950
D
0.705
MTR_1g028560
Medicago truncatula
MTR_1g028560
I
0.705
TCM_032408
Theobroma cacao
TCM_032408
I
0.705
Cagra.1225s0103
Capsella grandiflora
Cagra.1225s0103
I
0.705
Carubv10005229m.g
Capsella rubella
Carubv10005229m.g
I
0.705
Gorai.009G355700
Gossypium raimondii
Gorai.009G355700
I
0.705
Lus10027573.g
Linum usitatissimum
Lus10027573.g
I
0.705
Lus10039324.g
Linum usitatissimum
Lus10039324.g
I
0.705
CRF5
Arabidopsis thaliana
AT2G46310
I
0.704
CRF2
Arabidopsis thaliana
AT4G23750
D
0.704
CRF2
Arabidopsis lyrata
fgenesh2_kg.7__1924__AT4G23750.1
I
0.704
GLYMA02G40320
Glycine max
GLYMA02G40320
I
0.704
GLYMA03G23330
Glycine max
GLYMA03G23330
I
0.704
POPTR_0015s06070
Populus trichocarpa
POPTR_0015s06070
I
0.704
CRF4
Arabidopsis lyrata
scaffold_701473.1
I
0.704
Cucsa.118840
Cucumis sativus
Cucsa.118840
I
0.704
Bostr.7867s0178
Boechera stricta
Bostr.7867s0178
I
0.704
Cagra.1226s0039
Capsella grandiflora
Cagra.1226s0039
I
0.704
Carubv10005160m.g
Capsella rubella
Carubv10005160m.g
I
0.704
Eucgr.A02669
Eucalyptus grandis
Eucgr.A02669
I
0.704
SapurV1A.1017s0070
Salix purpurea
SapurV1A.1017s0070
I
0.704
AMTR_s00097p00165740
Amborella trichopoda
AMTR_s00097p00165740
I
0.703
GSMUA_Achr10G01110_001
Musa acuminata
GSMUA_Achr10G01110_001
I
0.703
GSMUA_Achr6G14240_001
Musa acuminata
GSMUA_Achr6G14240_001
I
0.703
GSMUA_Achr7G14200_001
Musa acuminata
GSMUA_Achr7G14200_001
I
0.703
POPTR_0014s09020
Populus trichocarpa
POPTR_0014s09020
I
0.703
Cla011108
Citrullus lanatus
Cla011108
I
0.702
Cucsa.107190
Cucumis sativus
Cucsa.107190
I
0.702
mgf019903m
Mimulus guttatus
mgf019903m
I
0.702
TCM_042300
Theobroma cacao
TCM_042300
I
0.701
GLYMA08G02460
Glycine max
GLYMA08G02460
I
0.700
GSMUA_Achr7G21980_001
Musa acuminata
GSMUA_Achr7G21980_001
I
0.700
Si022788m.g
Setaria italica
Si022788m.g
I
0.700
Cucsa.201950
Cucumis sativus
Cucsa.201950
I
0.700
chr2.CM0060.150.nc
Lotus japonicus
chr2.CM0060.150.nc
I
0.699
Bo2g070850
Brassica oleracea
Bo2g070850
I
0.698
Bo6g094430
Brassica oleracea
Bo6g094430
I
0.698
Bra003936
Brassica rapa
Bra003936
I
0.698
Bra007963
Brassica rapa
Bra007963
I
0.698
Cla021505
Citrullus lanatus
Cla021505
I
0.698
28641.m000082
Ricinus communis
28641.m000082
I
0.698
Cucsa.258900
Cucumis sativus
Cucsa.258900
I
0.698
Thhalv10001561m.g
Eutrema salsugineum
Thhalv10001561m.g
I
0.698
LjSGA_027251.1
Lotus japonicus
LjSGA_027251.1
I
0.698
CRF6
Arabidopsis lyrata
fgenesh2_kg.5__2643__AT3G61630.1
I
0.697
GSMUA_Achr9G28840_001
Musa acuminata
GSMUA_Achr9G28840_001
I
0.697
MLOC_58641
Hordeum vulgare
MLOC_58641
I
0.697
TRAES3BF017100030CFD_g
Triticum aestivum
TRAES3BF017100030CFD_g
I
0.697
cassava27467.m1
Manihot esculenta
cassava27467.m1
I
0.697
Ciclev10002183m.g
Citrus clementina
Ciclev10002183m.g
I
0.697
orange1.1g043400m.g
Citrus sinensis
orange1.1g043400m.g
I
0.697
SapurV1A.0013s0740
Salix purpurea
SapurV1A.0013s0740
I
0.697
BRADI2G07357
Brachypodium distachyon
BRADI2G07357
I
0.696
GSMUA_Achr11G19880_001
Musa acuminata
GSMUA_Achr11G19880_001
I
0.696
VIT_06s0004g08190
Vitis vinifera
VIT_06s0004g08190
I
0.695
Thhalv10019247m.g
Eutrema salsugineum
Thhalv10019247m.g
I
0.695
Bo4g009400
Brassica oleracea
Bo4g009400
I
0.694
Bra004548
Brassica rapa
Bra004548
I
0.694
POPTR_0002s16900
Populus trichocarpa
POPTR_0002s16900
I
0.694
Si002247m.g
Setaria italica
Si002247m.g
I
0.694
Pavir.Ea00119
Panicum virgatum
Pavir.Ea00119
I
0.694
Pavir.Eb00092
Panicum virgatum
Pavir.Eb00092
I
0.694
GSMUA_Achr10G26480_001
Musa acuminata
GSMUA_Achr10G26480_001
I
0.693
Thhalv10025693m.g
Eutrema salsugineum
Thhalv10025693m.g
I
0.693
mgf008137m
Mimulus guttatus
mgf008137m
I
0.692
mgf022434m
Mimulus guttatus
mgf022434m
I
0.692
Cagra.16778s0005
Capsella grandiflora
Cagra.16778s0005
I
0.691
evm.TU.supercontig_194.13
Carica papaya
evm.TU.supercontig_194.13
I
0.691
MDP0000190504
Malus domestica
MDP0000190504
I
0.691
PRUPE_ppa022995mg
Prunus persica
PRUPE_ppa022995mg
I
0.690
PRUPE_ppa025495mg
Prunus persica
PRUPE_ppa025495mg
I
0.690
Pm000232
Prunus mume
Pm000232
I
0.690
Pm018418
Prunus mume
Pm018418
I
0.690
GSMUA_Achr10G21940_001
Musa acuminata
GSMUA_Achr10G21940_001
I
0.689
Ca_15022
Cicer arietinum
Ca_15022
I
0.689
GSMUA_Achr7G10720_001
Musa acuminata
GSMUA_Achr7G10720_001
I
0.688
GSMUA_Achr8G01690_001
Musa acuminata
GSMUA_Achr8G01690_001
I
0.688
Bo1g017580
Brassica oleracea
Bo1g017580
I
0.686
GRMZM2G105266
Zea mays
GRMZM2G105266
I
0.686
GRMZM2G142179
Zea mays
GRMZM2G142179
I
0.686
LPERR01G07340
Leersia perrieri
LPERR01G07340
I
0.686
Sb03g001296
Sorghum bicolor
Sb03g001296
I
0.686
SapurV1A.0035s0790
Salix purpurea
SapurV1A.0035s0790
I
0.686
ERF6
Arabidopsis thaliana
AT4G17490
D
0.685
MTR_5g009620
Medicago truncatula
MTR_5g009620
I
0.685
VIT_15s0046g01390
Vitis vinifera
VIT_15s0046g01390
I
0.685
Bra040158
Brassica rapa
Bra040158
I
0.684
GLYMA13G08490
Glycine max
GLYMA13G08490
I
0.684
GSMUA_Achr8G19850_001
Musa acuminata
GSMUA_Achr8G19850_001
I
0.684
evm.TU.supercontig_3.43
Carica papaya
evm.TU.supercontig_3.43
I
0.684
Pavir.Ia04256
Panicum virgatum
Pavir.Ia04256
I
0.684
Bo7g056530
Brassica oleracea
Bo7g056530
I
0.683
POPTR_0019s15190
Populus trichocarpa
POPTR_0019s15190
I
0.683
SapurV1A.0099s0060
Salix purpurea
SapurV1A.0099s0060
I
0.683
SapurV1A.0215s0310
Salix purpurea
SapurV1A.0215s0310
I
0.683
SapurV1A.4828s0010
Salix purpurea
SapurV1A.4828s0010
I
0.683
OGLUM01G08910
Oryza glumaepatula
OGLUM01G08910
I
0.682
OMERI01G07770
Oryza meridionalis
OMERI01G07770
I
0.682
ONIVA01G10020
Oryza nivara
ONIVA01G10020
I
0.682
OPUNC01G07600
Oryza punctata
OPUNC01G07600
I
0.682
ORGLA01G0069400
Oryza glaberrima
ORGLA01G0069400
I
0.682
ORUFI01G08530
Oryza rufipogon
ORUFI01G08530
I
0.682
OS01G0224100
Oryza sativa
OS01G0224100
I
0.682
Bostr.12659s0155
Boechera stricta
Bostr.12659s0155
I
0.682
Cagra.0114s0006
Capsella grandiflora
Cagra.0114s0006
I
0.682
Carubv10010423m.g
Capsella rubella
Carubv10010423m.g
I
0.682
Eucgr.D01775
Eucalyptus grandis
Eucgr.D01775
I
0.682
Eucgr.E00834
Eucalyptus grandis
Eucgr.E00834
I
0.682
GRMZM2G044077
Zea mays
GRMZM2G044077
I
0.681
PGSC0003DMG400030472
Solanum tuberosum
PGSC0003DMG400030472
I
0.681
Ca_15671
Cicer arietinum
Ca_15671
I
0.681
evm.TU.supercontig_2.277
Carica papaya
evm.TU.supercontig_2.277
I
0.681
Gorai.006G208200
Gossypium raimondii
Gorai.006G208200
I
0.680
ATERF6
Arabidopsis lyrata
fgenesh2_kg.7__2560__AT4G17490.1
I
0.679
GLYMA19G44240
Glycine max
GLYMA19G44240
I
0.679
PGSC0003DMG400012305
Solanum tuberosum
PGSC0003DMG400012305
I
0.679
POPTR_0001s10300
Populus trichocarpa
POPTR_0001s10300
I
0.679
PRUPE_ppa025804mg
Prunus persica
PRUPE_ppa025804mg
I
0.679
Solyc06g082590.1
Solanum lycopersicum
Solyc06g082590.1
I
0.679
Solyc08g081960.1
Solanum lycopersicum
Solyc08g081960.1
I
0.679
TCM_016396
Theobroma cacao
TCM_016396
I
0.679
Cla011573
Citrullus lanatus
Cla011573
I
0.679
Pm024096
Prunus mume
Pm024096
I
0.679
cassava12291.valid.m1
Manihot esculenta
cassava12291.valid.m1
I
0.679
cassava39307.m1
Manihot esculenta
cassava39307.m1
I
0.679
Cucsa.303720
Cucumis sativus
Cucsa.303720
I
0.679
Bostr.30275s0206
Boechera stricta
Bostr.30275s0206
I
0.679
Cagra.3356s0040
Capsella grandiflora
Cagra.3356s0040
I
0.679
Carubv10005314m.g
Capsella rubella
Carubv10005314m.g
I
0.679
Ciclev10021073m.g
Citrus clementina
Ciclev10021073m.g
I
0.679
evm.TU.supercontig_122.27
Carica papaya
evm.TU.supercontig_122.27
I
0.679
Gorai.004G135700
Gossypium raimondii
Gorai.004G135700
I
0.679
Gorai.008G252300
Gossypium raimondii
Gorai.008G252300
I
0.679
MDP0000229285
Malus domestica
MDP0000229285
I
0.679
MDP0000783818
Malus domestica
MDP0000783818
I
0.679
orange1.1g036154m.g
Citrus sinensis
orange1.1g036154m.g
I
0.679
PK16787.1
Cannabis sativa
PK16787.1
I
0.679
Bo8g049450
Brassica oleracea
Bo8g049450
I
0.678
BGIOSGA009571
Oryza indica
BGIOSGA009571
I
0.677
OBART03G38710
Oryza barthii
OBART03G38710
I
0.677
OGLUM03G38530
Oryza glumaepatula
OGLUM03G38530
I
0.677
OMERI03G35630
Oryza meridionalis
OMERI03G35630
I
0.677
ONIVA03G40360
Oryza nivara
ONIVA03G40360
I
0.677
ORGLA03G0354400
Oryza glaberrima
ORGLA03G0354400
I
0.677
ORUFI03G40350
Oryza rufipogon
ORUFI03G40350
I
0.677
OS03G0815800
Oryza sativa
OS03G0815800
I
0.677
cassava8409.m1
Manihot esculenta
cassava8409.m1
I
0.677