Ciclev10022410m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10022410m.g T008026_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.801 0.920
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.801 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10022410m AP2 38 89

Links

Other AP2 family TFs
Other Citrus clementina TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.839
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.829
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.827
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.827
PK15554.1 Cannabis sativa PK15554.1 I 0.827
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.827
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.823
Pm018354 Prunus mume Pm018354 I 0.823
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.820
mgf020568m Mimulus guttatus mgf020568m I 0.820
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.819
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.819
29742.m001400 Ricinus communis 29742.m001400 I 0.819
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.815
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.815
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.815
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.815
TCM_005130 Theobroma cacao TCM_005130 I 0.814
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.814
Ca_01325 Cicer arietinum Ca_01325 I 0.805
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.803
ERF023 Arabidopsis thaliana AT1G01250 D 0.801
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.801
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.801
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.801
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.801
Ca_17638 Cicer arietinum Ca_17638 I 0.799
Bra032630 Brassica rapa Bra032630 I 0.797
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.795
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.795
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.791
Bo5g002600 Brassica oleracea Bo5g002600 I 0.788
Bra033274 Brassica rapa Bra033274 I 0.788
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.788
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.785
Bo8g117810 Brassica oleracea Bo8g117810 I 0.784
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.775
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.754
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.694
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.693
Cla012665 Citrullus lanatus Cla012665 I 0.690
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.690
TCM_036269 Theobroma cacao TCM_036269 I 0.683
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.683
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.682
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.681
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.679